[R] Error w/ Start up Script

[David Winsemius]

On Jun 18, 2012, at 11:25 AM, Lopez, Dan wrote:

> I noticed about a couple weeks ago that my R start up script  
> starting showing the below errors, following the line "Type 'q()' to  
> quit R"
>

I didn't see any errors reported. I didn't see any warnings, either.

-- 
David.

> Not sure what I did different and so far it hasn't caused major  
> problems but kind of fear that it will.
>
> Can you please help?
> I also posted my Rprofile below.
>
> Attempting to load the environment 'package:R.utils'
> R.methodsS3 v1.2.2 (2010-11-17) successfully loaded. See ? 
> R.methodsS3 for help.
> R.oo v1.9.3 (2012-03-18) successfully loaded. See ?R.oo for help.
>
> Attaching package: 'R.oo'
>
> The following object(s) are masked from 'package:R.methodsS3':
>
>    throw.default
>
> The following object(s) are masked from 'package:methods':
>
>    getClass, getClasses, getMethods
>
> The following object(s) are masked from 'package:base':
>
>    attach, detach, gc, load, save
>
> R.utils v1.12.1 (2012-03-20) successfully loaded. See ?R.utils for  
> help.
>
> Attaching package: 'R.utils'
>
> The following object(s) are masked from 'package:utils':
>
>    timestamp
>
> The following object(s) are masked from 'package:base':
>
>    cat, commandArgs, getOption, inherits, isOpen, lapply, parse,
>    warnings
>
> And here is my Rprofile.site file specs:
> # Things you might want to change
> # options(papersize="a4")
> # options(editor="notepad")
> # options(pager="internal")
>
> # set the default help type
> # options(help_type="text")
> options(help_type="html")
>
> # set a site library
> # .Library.site <- file.path(chartr("\\", "/", R.home()), "site- 
> library")
>
> # set a CRAN mirror
> local({r <- getOption("repos")
>   r["CRAN"] <- "http://cran.cnr.Berkeley.edu"
>   options(repos=r)})
>
> # Give a fortune cookie, but only to interactive sessions
> # (This would need the fortunes package to be installed.)
> #  if (interactive())
> #    fortunes::fortune()
>
>
> Daniel Lopez
> Workforce Analytics & Metrics Team
>
>
>
>
> 	[[alternative HTML version deleted]]
>
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> and provide commented, minimal, self-contained, reproducible code.

David Winsemius, MD
West Hartford, CT