[R] noob requesting help
capital_P
petervw48 at hotmail.com
Wed Jun 13 15:11:57 CEST 2012
Rui Barradas wrote
>
>
> Also, you should follow the posting guide and post a data example using
> dput(). Like this:
>
> dput(head(dat, 20)) # or 30, see ?head
>
> Then copy the output of that instruction and paste it in your post.
>
I can't find the posting guide
> dput(head(long, 20))
"2011-07-21 04:58:22", "2011-07-21 05:00:38", "2011-07-21 05:01:17",
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"2011-08-09 12:31:27", "2011-08-09 13:02:00"), class = "factor"),
day = c(2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L), month = c(6L, 6L, 6L, 6L, 6L,
6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L, 6L
), year = c(2008L, 2008L, 2008L, 2008L, 2008L, 2008L, 2008L,
2008L, 2008L, 2008L, 2008L, 2008L, 2008L, 2008L, 2008L, 2008L,
2008L, 2008L, 2008L, 2008L), hour = c(18L, 18L, 18L, 18L,
18L, 18L, 18L, 18L, 18L, 18L, 18L, 18L, 18L, 18L, 18L, 18L,
18L, 18L, 18L, 18L), minute = c(24L, 25L, 26L, 27L, 27L,
28L, 29L, 30L, 31L, 31L, 32L, 33L, 34L, 35L, 35L, 36L, 37L,
38L, 39L, 39L), seconds = c(37L, 25L, 13L, 1L, 51L, 37L,
26L, 13L, 1L, 50L, 38L, 26L, 14L, 2L, 50L, 38L, 25L, 14L,
2L, 50L), latitude = c(53.0086844, 53.0073172, 53.0072987,
53.0074199, 53.007425, 53.0074127, 53.0073899, 53.0074196,
53.007344, 53.0073058, 53.0073928, 53.0073665, 53.007368,
53.0073305, 53.0075514, 53.0062461, 53.0041679, 53.0030259,
53.0026628, 53.0016434), longitude = c(4.7152954, 4.7124807,
4.7124888, 4.7125712, 4.7124308, 4.7124896, 4.7124869, 4.7126068,
4.7126518, 4.7126989, 4.7126789, 4.7126554, 4.7126949, 4.7126662,
4.708657, 4.7018618, 4.696184, 4.6851359, 4.6724574, 4.6597175
), altitude = c(11L, -8L, -6L, -7L, -8L, -7L, -5L, -7L, -9L,
-5L, -10L, -6L, -7L, -4L, -5L, 28L, 45L, 34L, 58L, 51L),
speed = c(NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_), speed3d = c(NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_
), direction = c(271.44799390615, 249.033074730899, 248.73843730736,
250.246007582508, 250.764341582376, 250.399848123909, 250.072812233169,
250.125912183697, 248.844424558725, 248.110179425117, 249.482501827863,
249.167681054208, 249.054107842803, 248.593398667006, 259.287500573323,
256.334581772105, 251.368632221263, 254.263148255644, 257.77081842978,
258.781896557251), distance = c(195.533011252386, 411.015642749404,
411.251275242085, 401.36440658027, 410.030202131723, 406.774724318966,
407.802193484649, 399.134893410907, 399.261708269144, 397.888803717499,
395.636548779995, 398.140302980037, 395.611758173404, 398.90890022667,
650.976658981473, 1126.19200377051, 1555.81357970567, 2299.79354828882,
3133.08291135646, 3990.81515426576), userflag = c(0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L), species = structure(c(1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L), .Label = "Larus
fuscus", class = "factor"),
sex = structure(c(2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,
2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L), .Label = c("female",
"male"), class = "factor"), mass = c(960L, 960L, 960L, 960L,
960L, 960L, 960L, 960L, 960L, 960L, 960L, 960L, 960L, 960L,
960L, 960L, 960L, 960L, 960L, 960L), fduration = c(0.8, 0.8,
0.8, 0.833333333333333, 0.766666666666667, 0.816666666666667,
0.783333333333333, 0.8, 0.816666666666667, 0.8, 0.8, 0.8,
0.8, 0.8, 0.8, 0.783333333333333, 0.816666666666667, 0.8,
0.8, 1.03333333333333), cduration = c(0.891666666666667,
0.8, 0.8, 0.816666666666667, 0.8, 0.791666666666667, 0.8,
0.791666666666667, 0.808333333333333, 0.808333333333333,
0.8, 0.8, 0.8, 0.8, 0.8, 0.791666666666667, 0.8, 0.808333333333333,
0.8, 0.916666666666667), nestID = c(0L, 0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L),
long_trip = c(TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE,
TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE,
TRUE, TRUE), color_ring = structure(c(23L, 23L, 23L, 23L,
23L, 23L, 23L, 23L, 23L, 23L, 23L, 23L, 23L, 23L, 23L, 23L,
23L, 23L, 23L, 23L), .Label = c("FAAD", "FAAU", "FAAW", "FABN",
"FAJK", "FAJT", "FAKJ", "FAKK", "FAKL", "FAKN", "FAKS", "FAKU",
"FAKV", "FAPP", "FAPR", "FAPS", "MACN", "MACS", "MACT", "MACV",
"MAKM", "MAKT", "MAMA", "MAMB", "MAMJ", "MAMK", "MAML", "MAMM",
"MAMP", "MAPJ", "MAPK", "MAPL", "MAPM", "MAPN"), class = "factor"),
date_time.y = structure(c(8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L,
8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L, 8L), .Label =
c("2008-05-24",
"2008-05-25", "2008-05-26", "2008-05-27", "2008-05-28", "2008-05-31",
"2008-06-01", "2008-06-02", "2008-06-03", "2008-06-04", "2008-06-05",
"2008-06-06", "2008-06-07", "2008-06-08", "2008-06-09", "2008-06-10",
"2008-06-11", "2008-06-12", "2008-06-13", "2008-06-14", "2008-06-15",
"2008-06-16", "2008-06-17", "2008-06-18", "2008-06-19", "2008-06-20",
"2008-06-21", "2008-06-24", "2008-06-25", "2008-06-26", "2008-06-27",
"2009-05-20", "2009-05-21", "2009-05-22", "2009-05-23", "2009-05-24",
"2009-05-25", "2009-05-26", "2009-05-27", "2009-05-28", "2009-05-29",
"2009-05-30", "2009-05-31", "2009-06-01", "2009-06-02", "2009-06-03",
"2009-06-04", "2009-06-05", "2009-06-06", "2009-06-07", "2009-06-08",
"2009-06-09", "2009-06-10", "2009-06-11", "2009-06-12", "2009-06-13",
"2009-06-14", "2009-06-15", "2009-06-16", "2009-06-17", "2009-06-18",
"2009-06-19", "2009-06-20", "2009-06-21", "2009-06-22", "2009-06-23",
"2009-06-24", "2009-06-25", "2009-06-26", "2009-06-27", "2009-06-28",
"2009-06-29", "2009-06-30", "2009-07-01", "2009-07-02", "2009-07-03",
"2009-07-04", "2009-07-05", "2009-07-06", "2009-07-07", "2009-07-08",
"2010-05-24", "2010-05-25", "2010-05-26", "2010-05-27", "2010-05-28",
"2010-05-29", "2010-05-30", "2010-05-31", "2010-06-01", "2010-06-02",
"2010-06-03", "2010-06-04", "2010-06-05", "2010-06-06", "2010-06-07",
"2010-06-08", "2010-06-09", "2010-06-10", "2010-06-11", "2010-06-12",
"2010-06-13", "2010-06-14", "2010-06-15", "2010-06-16", "2010-06-17",
"2010-06-18", "2010-06-19", "2010-06-20", "2010-06-21", "2010-06-22",
"2010-06-23", "2010-06-24", "2010-06-25", "2010-06-26", "2010-06-27",
"2010-06-28", "2010-06-29", "2010-06-30", "2010-07-01", "2010-07-02",
"2010-07-03", "2010-07-04", "2010-07-05", "2010-07-06", "2010-07-07",
"2010-07-08", "2010-07-09", "2010-07-10", "2010-07-11", "2010-07-12",
"2010-07-13", "2010-07-14", "2010-07-15", "2010-07-16", "2010-07-17",
"2010-07-18", "2010-07-19", "2010-07-20", "2010-07-21", "2010-07-22",
"2010-07-23", "2010-07-24", "2010-07-25", "2010-07-26", "2010-07-27",
"2010-07-28", "2010-07-29", "2010-07-30", "2010-07-31", "2010-08-01",
"2011-05-09", "2011-05-10", "2011-05-11", "2011-05-12", "2011-05-13",
"2011-05-14", "2011-05-15", "2011-05-16", "2011-05-17", "2011-05-18",
"2011-05-19", "2011-05-20", "2011-05-21", "2011-05-22", "2011-05-23",
"2011-05-24", "2011-05-25", "2011-05-26", "2011-05-27", "2011-05-28",
"2011-05-29", "2011-05-30", "2011-05-31", "2011-06-01", "2011-06-02",
"2011-06-03", "2011-06-04", "2011-06-05", "2011-06-06", "2011-06-07",
"2011-06-08", "2011-06-09", "2011-06-10", "2011-06-11", "2011-06-12",
"2011-06-13", "2011-06-14", "2011-06-15", "2011-06-16", "2011-06-17",
"2011-06-18", "2011-06-19", "2011-06-20", "2011-06-21", "2011-06-22",
"2011-06-23", "2011-06-24", "2011-06-25", "2011-06-26", "2011-06-27",
"2011-06-28", "2011-06-29", "2011-06-30", "2011-07-01", "2011-07-02",
"2011-07-03", "2011-07-04", "2011-07-05", "2011-07-06", "2011-07-07",
"2011-07-08", "2011-07-09", "2011-07-10", "2011-07-11", "2011-07-12",
"2011-07-13", "2011-07-14", "2011-07-15", "2011-07-16", "2011-07-17",
"2011-07-18", "2011-07-19", "2011-07-20", "2011-07-21", "2011-07-22",
"2011-07-23", "2011-07-24", "2011-07-25", "2011-07-26", "2011-07-27",
"2011-07-28", "2011-07-29", "2011-07-30", "2011-07-31", "2011-08-01",
"2011-08-02", "2011-08-03", "2011-08-04", "2011-08-05", "2011-08-07",
"2011-08-08", "2011-08-09"), class = "factor"), breeding_status =
structure(c(4L,
4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,
4L, 4L, 4L, 4L), .Label = c("Chick care", "Fledging", "Hatching",
"Incubation", "Laying"), class = "factor"), breeding_phase = c(1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L), habitat = structure(c(7L, 1L, 1L, 1L, 1L,
1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 4L, 4L, 4L, 4L, 4L, 4L
), .Label = c("Beach", "Ijselmeer", "Mainland", "NorthSea",
"RazBol", "SWDelta", "Texel", "Wadden"), class = "factor"),
fdistance = c(392.362981661686, 347.822778347897, 2.2399055005,
16.2634200757001, 15.6264031033472, 6.68071975539527, 2.54516631710756,
13.7364019619101, 9.76119770102169, 6.7361280512109, 9.8972090447322,
3.91553096239263, 4.39658439806874, 5.24116438874534, 446.600312363533,
769.530802963015, 672.227933532991, 1235.34304431045, 1410.75706207244,
1421.51113768455), cdistance = c(370.092880004792, 175.031341924199,
9.25166278810007, 15.9449115895237, 11.1535614293712, 4.61294303625141,
8.14078413950882, 11.7487998314659, 8.2486628761163, 8.31666854797155,
6.90637000356241, 4.15605768023068, 4.81887439340704, 225.920738376139,
608.065557663274, 720.879368248003, 953.785488921723, 1323.05005319145,
1416.1340998785, 1635.57088162511), nest_time_min = c(NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_), avr_speed = c(NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_, NA_real_, NA_real_,
NA_real_, NA_real_, NA_real_, NA_real_), max_distance = c(FALSE,
FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,
FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE,
FALSE), trip_time_min = c(460.641666666667, 460.641666666667,
460.641666666667, 460.641666666667, 460.641666666667, 460.641666666667,
460.641666666667, 460.641666666667, 460.641666666667, 460.641666666667,
460.641666666667, 460.641666666667, 460.641666666667, 460.641666666667,
460.641666666667, 460.641666666667, 460.641666666667, 460.641666666667,
460.641666666667, 460.641666666667), dist_trav = c(81033.8438710604,
81033.8438710604, 81033.8438710604, 81033.8438710604, 81033.8438710604,
81033.8438710604, 81033.8438710604, 81033.8438710604, 81033.8438710604,
81033.8438710604, 81033.8438710604, 81033.8438710604, 81033.8438710604,
81033.8438710604, 81033.8438710604, 81033.8438710604, 81033.8438710604,
81033.8438710604, 81033.8438710604, 81033.8438710604)), .Names =
c("tripID",
"device_info_serial", "mdate", "date_time.x", "day", "month",
"year", "hour", "minute", "seconds", "latitude", "longitude",
"altitude", "speed", "speed3d", "direction", "distance", "userflag",
"species", "sex", "mass", "fduration", "cduration", "nestID",
"long_trip", "color_ring", "date_time.y", "breeding_status",
"breeding_phase", "habitat", "fdistance", "cdistance", "nest_time_min",
"avr_speed", "max_distance", "trip_time_min", "dist_trav"), row.names =
1765:1784, class = "data.frame")
I have tried your suggestion, but there are 2 problems:
1) The time column is in this format: "%Y-%m-%d %H:%M:%S". I have solved
this problem before using:
strptime(long$date_time.x, format = "%Y-%m-%d %H:%M:%S")
I am not sure where to implement this in your suggestion.
2) I am not sure if I should replace your x with anything.
I tried:
departures <- lapply(split(long, list(long$device_info_serial,
long$tripID)), function(x) x[strptime(long$date_time.x, format = "%Y-%m-%d
%H:%M:%S") == min(strptime(long$date_time.x, format = "%Y-%m-%d
%H:%M:%S")),])
do.call(rbind, departures)
R started calculating for hours and it hadn't even finished after I left it
overnight. I'm not sure whether this is because my laptop is too slow or the
dataset is too big, but my guess is I'm doing something wrong.
--
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