[R] compile fails with x86_64-alpine-linux-uclibc-gcc
nobody
darwinskernel at gmail.com
Sat Aug 11 18:55:03 CEST 2012
hello,
i am trying to build R on alpine/gentoo and it fails with the following
error msg:
connections.c: In function 'Rconn_fgetc':
connections.c:3184:11: error: expected identifier before '(' token
connections.c:3186:15: error: expected identifier before '(' token
make[3]: *** [connections.o] Error 1
any idea?
[see the attached file for a complete build log.]
i've walked back the versions down to 2.14.1 and i still get exact same
error msg.
couple of patches are applied which i will attach as well, but if you
find it too complicated, i can build from source by hand, if need be.
thanks
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[32;01m * [39;49;00mPackage: dev-lang/R-2.15.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: calchan at gentoo.org sci-mathematics at gentoo.org
[32;01m * [39;49;00mUSE: X amd64 elibc_uclibc kernel_linux minimal openmp readline userland_GNU
[32;01m * [39;49;00mFEATURES: fakeroot preserve-libs sandbox userpriv usersandbox
>>> [1m[37mcfg-update-1.8.2-r1[0m[0m: Creating checksum index...
>>> Unpacking source...
>>> Unpacking R-2.15.1.tar.gz to /dev/shm/portage/dev-lang/R-2.15.1/work
>>> Source unpacked in /dev/shm/portage/dev-lang/R-2.15.1/work
>>> Preparing source in /dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1 ...
[32;01m*[0m Applying R-2.11.1-parallel.patch ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Applying R-2.12.1-ldflags.patch ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Applying R-2.13.1-zlib_header_fix.patch ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Applying R-2.14.1-tiff.patch ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Applying R-2.14.1-rmath-shared.patch ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Running aclocal -I m4 ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Running autoconf ...
[A[152C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1 ...
* econf: updating R-2.15.1/tools/config.sub with /usr/share/gnuconfig/config.sub
* econf: updating R-2.15.1/tools/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-alpine-linux-uclibc --host=x86_64-alpine-linux-uclibc --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --enable-byte-compiled-packages --enable-R-shlib --disable-R-framework --with-system-zlib --with-system-bzlib --with-system-pcre --with-system-xz --with-blas=-L/usr/lib/blas/reference -lblas --docdir=/usr/share/doc/R-2.15.1 rdocdir=/usr/share/doc/R-2.15.1 --disable-nls --enable-openmp --disable-R-profiling --disable-memory-profiling --disable-static --disable-R-static-lib --without-cairo --without-ICU --without-jpeglib --without-lapack --without-recommended-packages --without-libpng --with-readline --without-libtiff --without-tcltk --with-x
configure: loading site script /usr/share/config.site
configure: loading site script /usr/share/crossdev/include/site/linux
configure: loading site script /usr/share/crossdev/include/site/linux-uclibc
configure: loading site script /usr/share/crossdev/include/site/x86_64-linux-uclibc
checking build system type... x86_64-alpine-linux-uclibc
checking host system type... x86_64-alpine-linux-uclibc
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... found
checking for working autoconf... found
checking for working automake... found
checking for working autoheader... found
checking for gawk... gawk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/lib/portage/bin/ebuild-helpers/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... no
checking for pdftex... no
configure: WARNING: you cannot build PDF versions of the R manuals
checking for pdflatex... no
configure: WARNING: you cannot build PDF versions of vignettes and help pages
checking for makeindex... no
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for ginstall-info... no
checking for install-info... /usr/bin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... no
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /usr/bin/bzip2
using default browser ... /usr/bin/xdg-open
checking for /usr/bin/xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for pkg-config... /usr/bin/pkg-config
checking for x86_64-alpine-linux-uclibc-gcc... x86_64-alpine-linux-uclibc-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-alpine-linux-uclibc-gcc accepts -g... yes
checking for x86_64-alpine-linux-uclibc-gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... x86_64-alpine-linux-uclibc-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether x86_64-alpine-linux-uclibc-gcc needs -traditional... no
checking how to run the C preprocessor... x86_64-alpine-linux-uclibc-gcc -E
defining F77 to be x86_64-alpine-linux-uclibc-gfortran
checking for x86_64-alpine-linux-uclibc-g77... x86_64-alpine-linux-uclibc-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-alpine-linux-uclibc-gfortran accepts -g... yes
checking for x86_64-alpine-linux-uclibc-g++... x86_64-alpine-linux-uclibc-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-alpine-linux-uclibc-g++ accepts -g... yes
checking how to run the C++ preprocessor... x86_64-alpine-linux-uclibc-g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether x86_64-alpine-linux-uclibc-gcc accepts -fvisibility... yes
checking whether x86_64-alpine-linux-uclibc-gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for x86_64-alpine-linux-uclibc-gcc... x86_64-alpine-linux-uclibc-gcc
checking whether we are using the GNU Objective C compiler... yes
checking whether x86_64-alpine-linux-uclibc-gcc accepts -g... yes
checking for Objective C++ compiler... trying some possibilities
checking whether x86_64-alpine-linux-uclibc-g++ can compile ObjC++... no
no working compiler found
checking for a sed that does not truncate output... (cached) /usr/lib/portage/bin/ebuild-helpers/sed
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-alpine-linux-uclibc-gcc... /usr/x86_64-alpine-linux-uclibc/bin/ld
checking if the linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-alpine-linux-uclibc/bin/ld option to reload object files... -r
checking for x86_64-alpine-linux-uclibc-objdump... x86_64-alpine-linux-uclibc-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-alpine-linux-uclibc-ar... (cached) ar
checking for x86_64-alpine-linux-uclibc-strip... x86_64-alpine-linux-uclibc-strip
checking for x86_64-alpine-linux-uclibc-ranlib... x86_64-alpine-linux-uclibc-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-alpine-linux-uclibc-gcc object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-alpine-linux-uclibc-g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... x86_64-alpine-linux-uclibc-g++ -E
checking for x86_64-alpine-linux-uclibc-g77... (cached) x86_64-alpine-linux-uclibc-gfortran
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether x86_64-alpine-linux-uclibc-gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if x86_64-alpine-linux-uclibc-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-alpine-linux-uclibc-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-alpine-linux-uclibc-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-alpine-linux-uclibc-gcc static flag -static works... yes
checking if x86_64-alpine-linux-uclibc-gcc supports -c -o file.o... yes
checking if x86_64-alpine-linux-uclibc-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-alpine-linux-uclibc-gcc linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by x86_64-alpine-linux-uclibc-g++... /usr/x86_64-alpine-linux-uclibc/bin/ld
checking if the linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) is GNU ld... yes
checking whether the x86_64-alpine-linux-uclibc-g++ linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) supports shared libraries... yes
checking for x86_64-alpine-linux-uclibc-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-alpine-linux-uclibc-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-alpine-linux-uclibc-g++ static flag -static works... yes
checking if x86_64-alpine-linux-uclibc-g++ supports -c -o file.o... yes
checking if x86_64-alpine-linux-uclibc-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-alpine-linux-uclibc-g++ linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-alpine-linux-uclibc-gfortran option to produce PIC... -fPIC
checking if x86_64-alpine-linux-uclibc-gfortran PIC flag -fPIC works... yes
checking if x86_64-alpine-linux-uclibc-gfortran static flag -static works... no
checking if x86_64-alpine-linux-uclibc-gfortran supports -c -o file.o... yes
checking if x86_64-alpine-linux-uclibc-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-alpine-linux-uclibc-gfortran linker (/usr/x86_64-alpine-linux-uclibc/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
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checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
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checking dl.h usability... no
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checking elf.h usability... yes
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checking fcntl.h usability... yes
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checking floatingpoint.h usability... no
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checking fpu_control.h usability... yes
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checking sys/utsname.h usability... yes
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checking for unistd.h... (cached) yes
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checking errno.h usability... yes
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checking limits.h usability... yes
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checking locale.h usability... yes
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checking stdarg.h usability... yes
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checking stdbool.h usability... yes
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checking for stdint.h... (cached) yes
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checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... (cached) no
checking for an ANSI C-conforming const... yes
checking for x86_64-alpine-linux-uclibc-gcc option to accept ISO C99... -std=gnu99
checking for x86_64-alpine-linux-uclibc-gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99
checking for inline... inline
checking size of int... (cached) 4
checking size of long... (cached) 8
checking size of long long... (cached) 8
checking size of double... 8
checking size of long double... 16
checking size of size_t... (cached) 4
checking whether we can compute C Make dependencies... yes, using x86_64-alpine-linux-uclibc-gcc -std=gnu99 -MM
checking whether x86_64-alpine-linux-uclibc-gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for x86_64-alpine-linux-uclibc-gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from x86_64-alpine-linux-uclibc-gfortran... -v
checking for Fortran 77 libraries of x86_64-alpine-linux-uclibc-gfortran... -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3 -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../x86_64-alpine-linux-uclibc/lib/../lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../x86_64-alpine-linux-uclibc/lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from x86_64-alpine-linux-uclibc-gcc -std=gnu99... -v
checking for C libraries of x86_64-alpine-linux-uclibc-gcc -std=gnu99... -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3 -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../x86_64-alpine-linux-uclibc/lib/../lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../../../x86_64-alpine-linux-uclibc/lib -L/usr/lib/gcc/x86_64-alpine-linux-uclibc/4.6.3/../../.. -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether x86_64-alpine-linux-uclibc-gfortran appends underscores to external names... yes
checking whether x86_64-alpine-linux-uclibc-gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether x86_64-alpine-linux-uclibc-gfortran and x86_64-alpine-linux-uclibc-gcc -std=gnu99 agree on int and double... yes
checking whether x86_64-alpine-linux-uclibc-gfortran and x86_64-alpine-linux-uclibc-gcc -std=gnu99 agree on double complex... yes
checking for x86_64-alpine-linux-uclibc-gfortran option to support OpenMP... -fopenmp
checking whether x86_64-alpine-linux-uclibc-g++ accepts -M for generating dependencies... yes
checking for x86_64-alpine-linux-uclibc-g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... yes, using x86_64-alpine-linux-uclibc-gcc -MM
checking for ObjC runtime library... -lobjc
checking for ObjC runtime style... gnu
checking whether x86_64-alpine-linux-uclibc-gcc accepts -fobjc-exceptions... yes
checking whether C runtime needs -D__NO_MATH_INLINES... no
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checking for working alloca.h... yes
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checking whether alloca is declared... yes
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checking whether utime exists and is declared... yes
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checking whether glob exists and is declared... yes
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checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
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checking for library containing connect... none required
checking for library containing gethostbyname... none required
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checking complex.h usability... yes
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checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
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checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
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checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
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checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_ in -L/usr/lib/blas/reference -lblas ... yes
checking whether double complex BLAS can be used... yes
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checking iconv.h usability... yes
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checking for iconv... in libiconv
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
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extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
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R is now configured for x86_64-alpine-linux-uclibc
Source directory: .
Installation directory: /usr
C compiler: x86_64-alpine-linux-uclibc-gcc -std=gnu99 -march=native -O3 -pipe -fomit-frame-pointer
Fortran 77 compiler: x86_64-alpine-linux-uclibc-gfortran -Os
C++ compiler: x86_64-alpine-linux-uclibc-g++ -march=native -O3 -pipe -fomit-frame-pointer
Fortran 90/95 compiler: x86_64-alpine-linux-uclibc-gfortran -Os
Obj-C compiler: x86_64-alpine-linux-uclibc-gcc -g -O2 -fobjc-exceptions
Interfaces supported: X11
External libraries: readline, BLAS(generic), lzma
Additional capabilities:
Options enabled: shared R library
Recommended packages: no
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
>>> Source configured.
>>> Compiling source in /dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1 ...
make -j3
make[1]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/m4'
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creating src/scripts/R.fe
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/scripts'
mkdir -p -- ../../bin
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make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/include'
mkdir -p -- ../../include
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/include/R_ext'
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/include'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
make[4]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[4]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
make[4]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c regcomp.c -o regcomp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c regerror.c -o regerror.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c regexec.c -o regexec.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-ast.c -o tre-ast.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-compile.c -o tre-compile.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-mem.c -o tre-mem.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-parse.c -o tre-parse.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c tre-stack.c -o tre-stack.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
x86_64-alpine-linux-uclibc-ranlib libtre.a
make[4]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra/tre'
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/extra'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
making bakslv.d from bakslv.c
making binning.d from binning.c
making cpoly.d from cpoly.c
making cumsum.d from cumsum.c
making fft.d from fft.c
making fmin.d from fmin.c
making integrate.d from integrate.c
making interv.d from interv.c
making lbfgsb.d from lbfgsb.c
making machar.d from machar.c
making maxcol.d from maxcol.c
making pretty.d from pretty.c
making rcont.d from rcont.c
making rowsum.d from rowsum.c
making stem.d from stem.c
making strsignif.d from strsignif.c
making tabulate.d from tabulate.c
making uncmin.d from uncmin.c
making zeroin.d from zeroin.c
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bakslv.c -o bakslv.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c binning.c -o binning.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c cpoly.c -o cpoly.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c cumsum.c -o cumsum.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fft.c -o fft.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fmin.c -o fmin.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c integrate.c -o integrate.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c interv.c -o interv.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c lbfgsb.c -o lbfgsb.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c machar.c -o machar.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c maxcol.c -o maxcol.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pretty.c -o pretty.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rcont.c -o rcont.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rowsum.c -o rowsum.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c stem.c -o stem.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c strsignif.c -o strsignif.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c tabulate.c -o tabulate.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c uncmin.c -o uncmin.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c zeroin.c -o zeroin.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c ch2inv.f -o ch2inv.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c chol.f -o chol.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dchdc.f -o dchdc.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpbfa.f -o dpbfa.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpbsl.f -o dpbsl.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpoco.f -o dpoco.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpodi.f -o dpodi.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dpofa.f -o dpofa.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dposl.f -o dposl.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dqrdc.f -o dqrdc.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dqrdc2.f -o dqrdc2.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dqrls.f -o dqrls.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dqrsl.f -o dqrsl.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dqrutl.f -o dqrutl.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dsvdc.f -o dsvdc.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dtrco.f -o dtrco.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c dtrsl.f -o dtrsl.o
x86_64-alpine-linux-uclibc-gfortran -fopenmp -fpic -Os -c eigen.f -o eigen.o
rm -f libappl.a
ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o
x86_64-alpine-linux-uclibc-ranlib libappl.a
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/appl'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making dgamma.d from dgamma.c
making sexp.d from sexp.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c mlutils.c -o mlutils.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c d1mach.c -o d1mach.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c i1mach.c -o i1mach.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fmax2.c -o fmax2.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fmin2.c -o fmin2.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fprec.c -o fprec.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fround.c -o fround.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c ftrunc.c -o ftrunc.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c sign.c -o sign.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c fsign.c -o fsign.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c imax2.c -o imax2.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c imin2.c -o imin2.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c chebyshev.c -o chebyshev.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c log1p.c -o log1p.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c expm1.c -o expm1.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c lgammacor.c -o lgammacor.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c gammalims.c -o gammalims.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c stirlerr.c -o stirlerr.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bd0.c -o bd0.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c gamma.c -o gamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c lgamma.c -o lgamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c gamma_cody.c -o gamma_cody.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c beta.c -o beta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c lbeta.c -o lbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c polygamma.c -o polygamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bessel_i.c -o bessel_i.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bessel_j.c -o bessel_j.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bessel_k.c -o bessel_k.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bessel_y.c -o bessel_y.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c choose.c -o choose.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c snorm.c -o snorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c sexp.c -o sexp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dgamma.c -o dgamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pgamma.c -o pgamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qgamma.c -o qgamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rgamma.c -o rgamma.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dbeta.c -o dbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pbeta.c -o pbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qbeta.c -o qbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rbeta.c -o rbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dunif.c -o dunif.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c punif.c -o punif.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qunif.c -o qunif.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c runif.c -o runif.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnorm.c -o dnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnorm.c -o pnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnorm.c -o qnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rnorm.c -o rnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dlnorm.c -o dlnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c plnorm.c -o plnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qlnorm.c -o qlnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rlnorm.c -o rlnorm.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c df.c -o df.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pf.c -o pf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qf.c -o qf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rf.c -o rf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnf.c -o dnf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dt.c -o dt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pt.c -o pt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qt.c -o qt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rt.c -o rt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnt.c -o dnt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dchisq.c -o dchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pchisq.c -o pchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qchisq.c -o qchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rchisq.c -o rchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rnchisq.c -o rnchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dbinom.c -o dbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pbinom.c -o pbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qbinom.c -o qbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rbinom.c -o rbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rmultinom.c -o rmultinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dcauchy.c -o dcauchy.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pcauchy.c -o pcauchy.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qcauchy.c -o qcauchy.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rcauchy.c -o rcauchy.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dexp.c -o dexp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pexp.c -o pexp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qexp.c -o qexp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rexp.c -o rexp.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dgeom.c -o dgeom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pgeom.c -o pgeom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qgeom.c -o qgeom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rgeom.c -o rgeom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dhyper.c -o dhyper.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c phyper.c -o phyper.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qhyper.c -o qhyper.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rhyper.c -o rhyper.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnbinom.c -o dnbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnbinom.c -o pnbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnbinom.c -o qnbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rnbinom.c -o rnbinom.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dpois.c -o dpois.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c ppois.c -o ppois.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qpois.c -o qpois.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rpois.c -o rpois.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dweibull.c -o dweibull.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pweibull.c -o pweibull.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qweibull.c -o qweibull.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rweibull.c -o rweibull.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dlogis.c -o dlogis.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c plogis.c -o plogis.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qlogis.c -o qlogis.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c rlogis.c -o rlogis.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnchisq.c -o dnchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnchisq.c -o pnchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnchisq.c -o qnchisq.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dnbeta.c -o dnbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnbeta.c -o pnbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnbeta.c -o qnbeta.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnf.c -o pnf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c pnt.c -o pnt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnf.c -o qnf.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qnt.c -o qnt.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c ptukey.c -o ptukey.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c qtukey.c -o qtukey.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c toms708.c -o toms708.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c wilcox.c -o wilcox.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
x86_64-alpine-linux-uclibc-ranlib libnmath.a
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/nmath'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
config.status: creating src/unix/Makefile
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
making dynload.d from dynload.c
making edit.d from edit.c
making stubs.d from stubs.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
making aqua.d from aqua.c
making Rembedded.d from Rembedded.c
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c dynload.c -o dynload.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c edit.c -o edit.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c stubs.c -o stubs.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c system.c -o system.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c sys-unix.c -o sys-unix.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c sys-std.c -o sys-std.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c X11.c -o X11.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c aqua.c -o aqua.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c Rembedded.c -o Rembedded.o
rm -rf libunix.a
ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o Rembedded.o
x86_64-alpine-linux-uclibc-ranlib libunix.a
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -Wl,-O1 -Wl,--as-needed -DR_HOME='"/usr/lib/R"' -o Rscript \
./Rscript.c
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/unix'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
config.status: creating src/main/Makefile
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
make[2]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
making CConverters.d from CConverters.c
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making base.d from base.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cov.d from cov.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making deriv.d from deriv.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making fourier.d from fourier.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making model.d from model.c
making names.d from names.c
making objects.d from objects.c
making optim.d from optim.c
making optimize.d from optimize.c
making options.d from options.c
making par.d from par.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making size.d from size.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
make[3]: Entering directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c CConverters.c -o CConverters.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c CommandLineArgs.c -o CommandLineArgs.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c Rdynload.c -o Rdynload.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c Renviron.c -o Renviron.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c RNG.c -o RNG.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c agrep.c -o agrep.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c apply.c -o apply.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c arithmetic.c -o arithmetic.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c array.c -o array.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c attrib.c -o attrib.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c base.c -o base.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c bind.c -o bind.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c builtin.c -o builtin.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c character.c -o character.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c coerce.c -o coerce.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c colors.c -o colors.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c complex.c -o complex.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c connections.c -o connections.o
x86_64-alpine-linux-uclibc-gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -march=native -O3 -pipe -fomit-frame-pointer -c context.c -o context.o
connections.c: In function 'Rconn_fgetc':
connections.c:3184:11: error: expected identifier before '(' token
connections.c:3186:15: error: expected identifier before '(' token
make[3]: *** [connections.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
make[2]: *** [R] Error 2
make[2]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src/main'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1/src'
make: *** [R] Error 1
[31;01m*[0m ERROR: dev-lang/R-2.15.1 failed (compile phase):
[31;01m*[0m emake failed
[31;01m*[0m
[31;01m*[0m If you need support, post the output of `emerge --info '=dev-lang/R-2.15.1'`,
[31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-lang/R-2.15.1'`.
[31;01m*[0m The complete build log is located at '/dev/shm/portage/build/dev-lang/R-2.15.1:20120811-161105.log'.
[31;01m*[0m For convenience, a symlink to the build log is located at '/dev/shm/portage/dev-lang/R-2.15.1/temp/build.log'.
[31;01m*[0m The ebuild environment file is located at '/dev/shm/portage/dev-lang/R-2.15.1/temp/environment'.
[31;01m*[0m Working directory: '/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1'
[31;01m*[0m S: '/dev/shm/portage/dev-lang/R-2.15.1/work/R-2.15.1'
-------------- next part --------------
Fix ocasional failure with parallel install (bug #322965)
Patch by Sebastien Fabbro
https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505
--- src/include/Makefile.in.orig 2010-06-15 18:18:54.000000000 +0000
+++ src/include/Makefile.in 2010-06-15 18:19:48.000000000 +0000
@@ -81,7 +81,7 @@
Rmath.h0: $(srcdir)/Rmath.h0.in $(top_builddir)/config.status
@cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
-install: installdirs install-intl- at USE_INCLUDED_LIBINTL@
+install: $(OBJ_HEADERS) installdirs install-intl- at USE_INCLUDED_LIBINTL@
@for d in $(SUBDIRS); do \
(cd $${d} && $(MAKE) $@) || exit 1; \
done
-------------- next part --------------
Respect ldflags on rscript
Patch by Sebastien Fabbro
https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506
--- src/unix/Makefile.in.orig 2010-12-22 16:58:19.000000000 +0000
+++ src/unix/Makefile.in 2010-12-22 16:54:16.000000000 +0000
@@ -66,7 +66,7 @@
## we need to build at install time to capture the correct 'rhome'
install-Rscript:
- $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
+ $(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(LDFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
$(srcdir)/Rscript.c
@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecbindir)"
@$(INSTALL_PROGRAM) Rscript "$(DESTDIR)$(Rexecbindir)/Rscript"
-------------- next part --------------
Update for zlib header changes
https://bugs.gentoo.org/show_bug.cgi?id=383431
--- src/main/unzip.h.orig 2011-09-24 19:35:53.000000000 -0700
+++ src/main/unzip.h 2011-09-24 19:37:06.000000000 -0700
@@ -58,6 +58,10 @@
#define ZLIB_FILEFUNC_SEEK_END (2)
#define ZLIB_FILEFUNC_SEEK_SET (0)
+#ifndef OF
+#define OF(x) x
+#endif
+
#define ZLIB_FILEFUNC_MODE_READ (1)
#define ZLIB_FILEFUNC_MODE_WRITE (2)
#define ZLIB_FILEFUNC_MODE_READWRITEFILTER (3)
-------------- next part --------------
Add a --with-libtiff to avoid broken implicit dependencies
Patch by Sebastien Fabbro
--- configure.ac.orig 2012-01-02 17:01:24.000000000 +0000
+++ configure.ac 2012-01-02 17:04:21.000000000 +0000
@@ -396,6 +396,10 @@
[AS_HELP_STRING([--with-jpeglib],[use jpeglib library (if available) @<:@yes@:>@])],
[R_ARG_USE(jpeglib)],
[use_jpeglib=yes])
+AC_ARG_WITH([libtiff],
+[AS_HELP_STRING([--with-libtiff],[use libtiff library (if available) @<:@yes@:>@])],
+[R_ARG_USE(libtiff)],
+[use_libtiff=yes])
AC_ARG_WITH([system-zlib],
[AS_HELP_STRING([--with-system-zlib],[use system zlib library (if available) @<:@no@:>@])],
[R_ARG_USE_SYSTEM(zlib)],
--- m4/R.m4.orig 2012-01-02 17:05:22.000000000 +0000
+++ m4/R.m4 2012-01-02 17:08:08.000000000 +0000
@@ -2005,16 +2005,18 @@
[Define if you have the PNG headers and libraries.])
fi
fi
-AC_CHECK_HEADERS(tiffio.h)
-# may need to resolve jpeg routines
-AC_CHECK_LIB(tiff, TIFFOpen, [have_tiff=yes], [have_tiff=no], [${BITMAP_LIBS}])
-if test "x${ac_cv_header_tiffio_h}" = xyes ; then
- if test "x${have_tiff}" = xyes; then
- AC_DEFINE(HAVE_TIFF, 1, [Define this if libtiff is available.])
- BITMAP_LIBS="-ltiff ${BITMAP_LIBS}"
- else
- have_tiff=no
- fi
+if test "${use_libtiff}" = yes; then
+ AC_CHECK_HEADERS(tiffio.h)
+ # may need to resolve jpeg routines
+ AC_CHECK_LIB(tiff, TIFFOpen, [have_tiff=yes], [have_tiff=no], [${BITMAP_LIBS}])
+ if test "x${ac_cv_header_tiffio_h}" = xyes ; then
+ if test "x${have_tiff}" = xyes; then
+ AC_DEFINE(HAVE_TIFF, 1, [Define this if libtiff is available.])
+ BITMAP_LIBS="-ltiff ${BITMAP_LIBS}"
+ else
+ have_tiff=no
+ fi
+ fi
fi
AC_SUBST(BITMAP_LIBS)
])# R_BITMAPS
-------------- next part --------------
Link with libm to fix unresolved symbols when linked with as-needed
and add a soname to the standalone math library
Patch by Sebastien Fabbro
--- src/nmath/standalone/Makefile.in.orig 2010-03-17 14:43:22.000000000 +0000
+++ src/nmath/standalone/Makefile.in 2012-01-02 17:40:13.000000000 +0000
@@ -64,7 +64,8 @@
Rexeclibdir_LTLIBRARIES = $(libRmath_la)
libRmath_la_SOURCES = $(SOURCES)
libRmath_la_OBJECTS = $(OBJECTS:.o=.lo)
-libRmath_la_LDFLAGS =
+libRmath_la_LDFLAGS = -Wl,-soname=libRmath.so
+libRmath_la_LIBADD = $(LIBM)
CLEANFILES = Makedeps *.d *.o *.lo test $(SOURCES)
DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
@@ -116,7 +117,7 @@
$(RANLIB) $@
$(libRmath_la): $(libRmath_la_OBJECTS)
- $(DYLIB_LINK) -o $@ $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS)
+ $(DYLIB_LINK) $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) $(libRmath_la_LIBADD) -o $@
test: $(srcdir)/test.c
$(CC) -o $@ $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(srcdir)/test.c \
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