[R] Performing basic Multiple Sequence Alignment in R?

[aishualex]

hello everyone,
i wanted help to build a* user defined function in R  for multiple sequence
alignment*.
i tried using pairwisealignment () for the multiple sequences, but the
results seem to be wrong.
i have 10 sequences which i have to align ( by building profiles).
is there a function to build a *postion frequency matrix*?
 thanks,
alex

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