[R] help! kennard-stone algorithm in soil.spec packages does not work for my dataset!!!
tauQSAR
cisek.2 at buckeyemail.osu.edu
Fri Jul 15 22:09:09 CEST 2011
I'm also trying to use the kennard-stone algorithm in the soil.spec package
for my dataset,
(to generate a training and test set from the data, based on this algorithm,
because it's the
most commonly used and well-performing algorithm in QSAR studies) but it's
generating an error:
> ken.sto(mydataIN)
Error in ken.sto(mydataIN) : subscript out of bounds
My data is a 42 row by 6 column all numerical (except header) matrix of the
format:
id x1 x2 x3 x4 y1
2 66.7 7.71 0.079 4.58 3.0792
13 79.7 9.57 0.100 4.82 2.8451
5 77.7 3.10 0.071 1.42 0.4771
6 82.1 7.58 0.071 2.08 0.7160
32 98.8 5.60 0.143 3.27 1.7160
36 93.3 4.74 0.097 4.16 1.7160
...
I cannot find any documentation for the exact format of the data matrix for
this
function (http://www.inside-r.org/packages/cran/soil.spec/docs/ken.sto does
not
have this information). Any help would be appreciated!!!
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