[R] Why do I get (not estimable) in this aov data
Hedberg Peter
phedberg at biol.uw.edu.pl
Tue Nov 30 13:58:34 CET 2010
Dear all.
I am trying to analyze my data with an anova, using aov, and the result looks like this
> my_data<-read.csv(file.choose(),header=T,dec=".",sep=";")
> attach(my_data)
> names(my_data)
[1] "Site" "Obstacle" "Treatment" "Dist_Obstacle" "Dist_start" "Transect" "Mainplot" "Obsplot" "Species1" "Species2" "Species3"
[12] "Species4" "Species5" "Species6" "Species7" "Species8" "Species9" "Species10" "Species11" "Species12" "Species13" "Species14"
[23] "Species15" "Species16" "Species_change" "channge_index" "Waterdata" "litter" "bare.soil"
> aov_data<-aov(Species1~Site+Obstacle+Treatment+as.factor(Dist_Obstacle)+as.factor(Dist_start)+Transect+Mainplot+Obsplot)
> aov_data
Call:
aov(formula = Species1 ~ Site + Obstacle + Treatment + as.factor(Dist_Obstacle) +
as.factor(Dist_start) + Transect + Mainplot + Obsplot)
Terms:
Site Obstacle Treatment as.factor(Dist_Obstacle) as.factor(Dist_start) Transect Obsplot Residuals
Sum of Squares 2143.984 446.274 340.042 736.073 173.707 800.270 4014.378 17238.625
Deg. of Freedom 2 1 1 4 3 10 60 271
Residual standard error: 7.97566
27 out of 109 effects not estimable
Estimated effects may be unbalanced
My question is why do I get "effects not estimable", and "effects may be unbalanced). I have checked the data and it is balanced.
I have attached the data to the question and would be greatly thankful for any help in understanding the output.
Best regards,
Petter
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