[R] need help when "make check" R-2.11.1

Kuan(謝冠生) lakersgogo at mail2000.com.tw
Mon Jun 21 10:39:01 CEST 2010


To whom it may concern:

My OS: CentOS 5.5
R version: R-2.11.1

My questions are as follows:
First, I inputted commands:
-----------------------------
# ./configure --enable-R-shlib
# make
# make check
-----------------------------

Everything goes well until "make check".
screen log:
**************************************
make[1]: Entering directory `/tmp/R-2.11.1/tests'
make[2]: Entering directory `/tmp/R-2.11.1/tests'
make[3]: Entering directory `/tmp/R-2.11.1/tests/Examples'

Collecting examples for package 'base'
  Extracting from parsed Rd's ........................................
Running examples in package 'base'
Error: testing 'base' failed
Execution halted
make[3]: *** [test-Examples-Base] Error 1
make[3]: Leaving directory `/tmp/R-2.11.1/tests/Examples'
make[2]: *** [test-Examples] Error 2
make[2]: Leaving directory `/tmp/R-2.11.1/tests'
make[1]: *** [test-all-basics] Error 1
make[1]: Leaving directory `/tmp/R-2.11.1/tests'
make: *** [check] Error 2
***************************************

I've tried to understand what's going on:
--------------------------------------
# tail tests/Examples/base-Ex.Rout.fail 

screen log:
**************************************
> ## xz compression is only worthwhile for large objects
> txt.xz <- memCompress(txt, "x")
Error in memCompress(txt, "x") : internal error 5 in memCompress
Execution halted
**************************************

It seems that the problem is related to xz software, but I've xz installed properly on my system and works fine to me.
I am also pretty interested in what "internal error 5" means??

Any idea of this error??

Thank you very much.


KuanSheng Hsieh
Taipei, Taiwan



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