[R] Sweve/cacheSweave
Cameron Bracken
cameron.bracken at gmail.com
Fri Feb 12 03:03:58 CET 2010
This is correct, we have stylepath set to true by default.
Also I noticed that your original command will not work correctly:
> Sweave("pgfSweave-example.Rnw",driver = cacheSweaveDriver)
If you use cacheSweaveDriver() with pgfSweave-example.Rnw the tikz
option will not be recognized.
You should use
pgfSweave("pgfSweave-example.Rnw",pdf=T)
-Cameron
On Thu, Feb 11, 2010 at 6:36 PM, Yihui Xie <xie at yihui.name> wrote:
> If I understand pgfSweave correctly, a line like this
>
> \usepackage{C:/PROGRA~1/R/some.version/share/texmf/Sweave}
>
> will be added to the preamble of your LaTeX document if you didn't
> explicitly add \usepackage{Sweave} by yourself.
>
> That will cause the error like
>
> Missing \endcsname inserted
> The control sequence marked <to be read again> should not appear
> between \csname and \endcsname.
>
> (I cc'ed to Cameron to see if I'm correct)
>
> Regards,
> Yihui
> --
> Yihui Xie <xieyihui at gmail.com>
> Phone: 515-294-6609 Web: http://yihui.name
> Department of Statistics, Iowa State University
> 3211 Snedecor Hall, Ames, IA
>
>
>
> On Thu, Feb 11, 2010 at 7:39 AM, Unger, Kristian <k.unger at imperial.ac.uk> wrote:
>> Thank you very much Duncan! Adding the line \usepackage{Sweave} fixed the problem.
>>
>> Best wishes
>>
>> Kristian
>> _____
>>
>> Dr Kristian Unger
>>
>> Bioinformaticist Chernobyl Tissue Bank
>>
>> Division of Surgery and Cancer
>>
>> Imperial College London
>>
>> Rm G02, Ground floor G Block
>> Hammersmith Hospital
>> Du Cane Road,
>> London W12 0HS
>>
>> Tel +44-20-8383-2443
>>
>> Mob +44-795-1080619
>>
>> Skype kristianunger
>>
>> http://www1.imperial.ac.uk/medicine/about/divisions/is/histo/
>> http://www.chernobyltissuebank.com
>>
>> -----Original Message-----
>> From: Duncan Murdoch [mailto:murdoch at stats.uwo.ca]
>> Sent: 11 February 2010 12:06
>> To: Unger, Kristian
>> Cc: 'r-help at r-project.org'
>> Subject: Re: [R] Sweve/cacheSweave
>>
>> On 11/02/2010 6:06 AM, Duncan Murdoch wrote:
>>> Unger, Kristian wrote:
>>>> Hi there
>>>>
>>>> I have a problem with using Sweave in combination with the option driver = cacheSweave.
>>>>
>>>> Whichever code I try to run - when it comes to converting the tex file into pdf it comes up with the same errors (\csname \endcsname errors). Does anybody have an idea what it going wrong?
>>>>
>>>>
>>>>> Sweave("pgfSweave-example.Rnw",driver = cacheSweaveDriver)
>>>>>
>>>> Writing to file pgfSweave-example.tex
>>>> Processing code chunks ...
>>>> 1 : term verbatim (label=setup)
>>>> 2 : echo term verbatim (label=data)
>>>> 3 : term verbatim eps pdf (label=boxplot)
>>>>
>>>> You can now run LaTeX on 'pgfSweave-example.tex'
>>>>
>>>>
>>>>> tools::texi2dvi("pgfSweave-example.tex", pdf=TRUE)
>>>>>
>>>> Error in tools::texi2dvi("pgfSweave-example.tex", pdf = TRUE) :
>>>> running 'texi2dvi' on 'pgfSweave-example.tex' failed
>>>>
>>>> LaTeX errors:
>>>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10: Missing
>>>> \endcsname inserted
>>>> The control sequence marked <to be read again> should
>>>> not appear between \csname and \endcsname.
>>>>
>>>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10: LaTeX E
>>>> rror: Missing \begin{document}.
>>>>
>>>
>>> I think this is the important error: it looks as though your .tex file
>>> isn't a complete LaTeX document. The other errors likely follow from this.
>>
>> From an offline followup: the .tex was complete, but it included a
>> path to Sweave.sty that contained TeX-special characters, and that was
>> the source of the error. See ?RweaveLatex for a discussion of how to
>> avoid this.
>>
>> Duncan Murdoch
>>
>>>
>>> Duncan Murdoch
>>>> See the LaTeX manual or LaTeX Companion for explanation.
>>>> Type H <return> for immediate help
>>>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10: Extra \
>>>> endcsname
>>>> I'm ignoring this, since I wasn't doing a \csname.
>>>>
>>>>
>>>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10: Missing
>>>> \endcsname inserted
>>>> The control sequence marked <to be read again> should
>>>> not appear between \csname and \endcsname.
>>>>
>>>> C:/Imperial/Sileida/DOUBLECHECK/ALL/eval_amps/pgfSweave-example.tex:10: Extra \
>>>> endcsname
>>>> I'm ignoring this, since I wasn't doing a \csname.
>>>>
>>>> I am running this under Windows XP, R version 2.9.2 (2009-08-24), > package.version("cacheSweave")
>>>> [1] "0.4-3".
>>>>
>>>> Any help or advice on this would be highly appreciated!
>>>>
>>>> Best wishes
>>>>
>>>> Kristian
>>>>
>>>> _____
>>>>
>>>> Dr Kristian Unger
>>>>
>>>> Bioinformaticist Chernobyl Tissue Bank
>>>>
>>>> Division of Surgery and Cancer
>>>>
>>>> Imperial College London
>>>>
>>>> Rm G02, Ground floor G Block
>>>> Hammersmith Hospital
>>>> Du Cane Road,
>>>> London W12 0HS
>>>>
>>>> Tel +44-20-8383-2443
>>>>
>>>> Mob +44-795-1080619
>>>>
>>>> Skype kristianunger
>>>>
>>>> http://www1.imperial.ac.uk/medicine/about/divisions/is/histo/
>>>> http://www.chernobyltissuebank.com
>>>>
>>>>
>>>> [[alternative HTML version deleted]]
>>>>
>>>> ______________________________________________
>>>> R-help at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>
>> ______________________________________________
>> R-help at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
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