[R] modify a nomogram
Frank Harrell
f.harrell at vanderbilt.edu
Wed Aug 25 14:49:30 CEST 2010
Update to the rms package which is the version now being actively
supported. New features will not be added to Design. The nomogram
function in rms separates the plotting into a plot method for easier
understanding. You can control all axes - some experimentation can
tell you if you can do what you want as I haven't tried exactly what
you are doing.
Frank
Frank E Harrell Jr Professor and Chairman School of Medicine
Department of Biostatistics Vanderbilt University
On Wed, 25 Aug 2010, david dav wrote:
> Hi,
> I would like to emphasize ("zoom") the zone of a nomogram where the
> probability are > 0.01
> (nomogram built with nomogram, Design).
> As a consequence, I don't need to draw the part of the "Total points"
> axis with score < 60 equivalent in my case to a linear predictor < 4.5
>
> - As far as I know, this is not possible with the arguments of the function.
> - Changing the code of the function is beyond my abilities
> -- can not even create a "nomo.f" function with the same body:
> body(nomo) <- expression({
> conf.lp <- match.arg(conf.lp) ..... rest of the function body
> this does not even work
> -- I am not sure to find the piece of code responsible for
> defining the axis
>
> nomogram(logistic.fit, fun = plogis, fun.at = c(seq(0.01,1,by=.2)),
> lmgp=.2, lp = T,maxscale = 100, total.sep.page = T )
>
> Thanks
> David
>
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