[R] Hmisc, Design, summary.Design plot- changing confidence intervals, adding color or decreasing font size

[Frank E Harrell Jr]

Elizabeth Stanny wrote:
> Hi,
> 
> 1. I want 95% not 99% confidence intervals in my summary.Design plot using the Design package. Putting conf.int=.95 as an argument in plot does not work.  The  default appears  to be .99 not .95 as stated in the package Design manual (p. 164). 
> 

Please check the documentation again.  conf.int is not an argument to 
plot; it is an argument to summary.

Frank

> 2.  My sweave chuck is below and my output is attached as well as linked here:
> http://www.sonoma.edu/users/s/stanny/330A/project/ciplot.pdf
> 
> 3.  Alternatively, how do I make the confidence interval text smaller for the second plot (the interval text is cut-off) or  color the intervals? 
> 
> 4.  I have 14 plots and would like to have 2 per page.
> 
> Thanks in advance.  
> 
> <<ghg07,fig=T>>=
> par(mfrow=c(2,1))
> s.fghg.new.06 <- summary(fghg.new.06)
> s.fghg.06 <- summary(fghg.06)
> dimnames(s.fghg.new.06)[[1]] <- newoddsl
> dimnames(s.fghg.06)[[1]] <- oldoddsl
> 
> plot(s.fghg.06, log=T,
>      main="Disclosed Accounting Method",
>      at=c(.5,1,2,4,8,20),
>      cex=.65,
>      cex.c=.65,
>      cex.t=.65)
> 
> plot(s.fghg.new.06, log=T,
>      main="Did not not Disclose CDP06",
>      at=c(.5,1,2,4,8,20),
>      cex= .65,
>      cex.c= .65,
>      cex.t= .65)
> @
> 
> where:
> fghg.06 <- lrm(ghg.2006 ~ghg.2005+intsalep.2006 + EPA.2006 + toper.2006 + vol.2006 + lnass.2006,
>                data=dw,  x=TRUE, y=TRUE)
> 
> fghg.new.06 <- lrm(ghg ~intsalep + EPA + toper + vol + lnass,
>                 data=newghg,subset=year==0, x=TRUE, y=TRUE)
> 
> 
> Elizabeth Stanny
> Professor of Business
> Sonoma State University
> stanny at sonoma.edu
> 
> 
> ------------------------------------------------------------------------
> 
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-- 
Frank E Harrell Jr   Professor and Chair           School of Medicine
                      Department of Biostatistics   Vanderbilt University