[R] Installing quantreg package under Ubuntu
Frank E Harrell Jr
f.harrell at vanderbilt.edu
Tue Aug 18 14:20:03 CEST 2009
Ben Bolker wrote:
>
>
> Frank E Harrell Jr wrote:
>> Does any have installation instructions for this? When I run
>> install.packages('quantreg') I get:
>>
>> gcc -std=gnu99 -shared -o quantreg.so akj.o boot.o brute.o chlfct.o
>> cholesky.o combos.o crq.o crqfnb.o dsel05.o etime.o extract.o idmin.o
>> iswap.o kuantile.o mcmb.o penalty.o powell.o rls.o rq0.o rq1.o rqbr.o
>> rqfn.o rqfnb.o rqfnc.o sparskit2.o srqfn.o srqfnc.o srtpai.o -llapack
>> -lblas -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib -lR
>> /usr/bin/ld: cannot find -llapack
>>
>>
>> > sessionInfo()
>> R version 2.9.0 (2009-04-17)
>> i486-pc-linux-gnu
>>
>> [snip]
>>
>>
>
> http://wiki.r-project.org/rwiki/doku.php?id=getting-started:installation:debian
>
> suggests
>
> (sudo) apt-get install r-base-dev
Ben,
Installing r-base-dev was the key. Thanks! Now
install.packages('quantreg') works perfectly.
Frank
>
> or perhaps
>
> sudo apt-get build-dep r-base
>
> also see
>
> http://cran.r-project.org/bin/linux/ubuntu/
>
> for instructions on access to more up-to-date
> repositories, the most salient of which are:
> ====================
> add
>
> deb http://<my.favorite.cran.mirror>/bin/linux/ubuntu jaunty/
>
> (or hardy, intrepid, etc.) to /etc/apt/sources.list
>
> The Ubuntu archives on CRAN are signed with the key of "Vincent Goulet
> <vincent.goulet at act.ulaval.ca>" with key ID E2A11821. You can fetch this key
> with
>
> gpg --keyserver subkeys.pgp.net --recv-key E2A11821
>
> and then feed it to apt-key with
>
> gpg -a --export E2A11821 | sudo apt-key add -
>
>
--
Frank E Harrell Jr Professor and Chair School of Medicine
Department of Biostatistics Vanderbilt University
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