[R] exact method in coxph
Julian Wucherpfennig
wucherpfennig at icr.gess.ethz.ch
Wed Jan 16 16:42:09 CET 2008
I'm trying to estimate a cox proportional hazards regression for repeated
events (in gap time) with time varying covariates. The dataset consists of
just around 6000 observations (lines) (110 events).
The (stylized) data look as follows:
unit dur0 dur1 eventn event ongoing x
1 0 1 0 0 0 32.23
1 1 2 0 1 1 35.34
1 0 1 1 0 1 36.12
1 0 1 1 1 1 45.83
1 1 2 2 0 0 32.43
1 2 3 2 0 0 53.63
1 4 4 2 1 1 45.48
2 0 1 0 0 0 14.84
2 1 2 0 1 1 08.63
A complication here is that units can experience repeated events while
previous events are still ongoing.
I tried the following: cox1 <- coxph( Surv( dur0, dur1, event) ~
strata(eventn) + x)
This works fine under the breslow and efron method. However, since I have a
fair number of ties, especially of repeated events while previous events are
still ongoing, the exact method seems advisable.
The help says that the exact method is computationally demanding, but even
after days the computing it won't finish. Also, if I include a frailty-term,
the exact method gives me results in no time. Is my setup incorrect?
Many thanks in advance!
-----
Julian Wucherpfennig
PhD Student Political Science
ETH Zurich - Swiss Federal Institute of Technology
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