[R] g++ verfsion

[xinan yang]

Hi, Li,

Thanks for reply.

It is strange that I used RBGL_1.6.0 successfully on the same linux 
system with R 2.3.1 before!

After trying to install R 2.5.1, the RBGL_1.12.0 failed to be installed.

Then, I uninstalled R.   Delete the directory R/lib/.
Installed R.2.3.1 again. And run getBioC1.8.5 for R 2.3.1 to download 
the three packages
graph_1.10.6, RBGL_1.12.0 and Ruuid_1.10.0.

But still failed as:
......
   boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
   boost::default_color_type, boost::no_property>, size_t>&)'
make: *** [interfaces.o] Error 1
chmod: failed to get attributes of 
`/usr/local/lib/R/library/RBGL/libs/*': No such file or directory
ERROR: compilation failed for package 'RBGL'
** Removing '/usr/local/lib/R/library/RBGL'


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Is it maybe because I use redhat9 with libxml2-2.5.4-1, which doesn't 
neet the not meets the requirment of RBGL_1.12.0 ?

But I do not know how to updata them, even after downloading the  file 
libxml2-2.5.4-3.rh9.i386.rpm,
I failed to install it:

[root at yxnlinux software]# rpm -i libxml2-2.5.4-3.rh9.i386.rpm
        file /usr/bin/xmlcatalog from install of libxml2-2.5.4-3.rh9 
conflicts with file from package libxml2-2.5.4-1
        file /usr/bin/xmllint from install of libxml2-2.5.4-3.rh9 
conflicts with file from package libxml2-2.5.4-1
        file /usr/lib/libxml2.so.2.5.4 from install of 
libxml2-2.5.4-3.rh9 conflicts with file from package libxml2-2.5.4-1
        file /usr/share/man/man1/xmlcatalog.1.gz from install of 
libxml2-2.5.4-3.rh9 conflicts with file from package libxml2-2.5.4-1
        file /usr/share/man/man1/xmllint.1.gz from install of 
libxml2-2.5.4-3.rh9 conflicts with file from package libxml2-2.5.4-1
        file /usr/share/man/man3/libxml.3.gz from install of 
libxml2-2.5.4-3.rh9 conflicts with file from package libxml2-2.5.4-1

 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
FOr redhat9, Is it possible to updat gcc?

Thanks,


Xinan




Li.Long at isb-sib.ch wrote:

>This gcc is VERY old, we saw some problems in template handling with
>different version of g++.
>
>I would suggest to try a newer version of g++ and see what happens.
>
>Li
>
>
>  
>
>>and,
>>
>>[root at yxnlinux getBioC2.5-R2.5.1]# g++ --version
>>g++ (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
>>Copyright (C) 2002 Free Software Foundation, Inc.
>>
>>tks,
>>
>>xinan
>>
>>    
>>
>
>
>
>  
>