[R] merging with aggregating
Adaikalavan Ramasamy
ramasamy at cancer.org.uk
Tue Dec 6 15:40:09 CET 2005
m1 <- cbind( n=c(1,2,3,4,6,7,8,9,10,13), v1=c(12,10,3,8,7,12,1,18,1,2),
v2=c(0,8,8,4,3,0,0,0,0,0) )
m2 <- cbind( n=c(1,2,3,4,5,6,8,10,11,12), v1=c(0,0,1,12,2,2,2,4,7,0),
v2=c(2,3,9,8,9,9,0,1,1,1) )
m.all <- merge(m1, m2, by="n", all=T)
n v1.x v2.x v1.y v2.y
1 1 12 0 0 2
2 2 10 8 0 3
3 3 3 8 1 9
4 4 8 4 12 8
5 5 NA NA 2 9
6 6 7 3 2 9
7 7 12 0 NA NA
8 8 1 0 2 0
9 9 18 0 NA NA
10 10 1 0 4 1
11 11 NA NA 7 1
12 12 NA NA 0 1
13 13 2 0 NA NA
Then depending on how many such columns there are, you have a number of
ways of aggregating this dataset. One such way is
cbind( n=m.all[ , "n"],
v1=rowSums( m.all[ , grep( "^v1", colnames(m.all) ) ], na.rm=T ),
v2=rowSums( m.all[ , grep( "^v2", colnames(m.all) )], na.rm=T ) )
n v1 v2
1 1 12 2
2 2 10 11
3 3 4 17
4 4 20 12
5 5 2 9
6 6 9 12
7 7 12 0
8 8 3 0
9 9 18 0
10 10 5 1
11 11 7 1
12 12 0 1
13 13 2 0
Regards, Adai
On Tue, 2005-12-06 at 14:22 +0100, Dubravko Dolic wrote:
> Dear List,
>
> I have two data.frame of the following form:
>
> A:
>
> n V1 V2
> 1 12 0
> 2 10 8
> 3 3 8
> 4 8 4
> 6 7 3
> 7 12 0
> 8 1 0
> 9 18 0
> 10 1 0
> 13 2 0
>
> B:
>
> n V1 V2
> 1 0 2
> 2 0 3
> 3 1 9
> 4 12 8
> 5 2 9
> 6 2 9
> 8 2 0
> 10 4 1
> 11 7 1
> 12 0 1
>
>
> Now I want to merge those frame to one data.frame with summing up the
> columns V1 and V2 but not the column n. So the result in this example
> would be:
>
> AB:
>
> n V1 V2
> 1 12 2
> 2 10 11
> 3 4 17
> 4 20 12
> 5 2 9
> 6 9 12
> 7 12 0
> 8 3 0
> 9 18 0
> 10 5 1
> 11 7 1
> 12 0 1
> 13 2 0
>
>
> So Columns V1 and V2 are the sum of A und B while n has its old value.
> Notice that there are different rows in n of A and B.
>
> I don't have a clue how to start here. Any hint is welcome.
>
> Thanks
>
> Dubravko Dolic
> Munich
> Germany
>
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