[R] R CMD check doesn't stop with checking examples
Uwe Ligges
ligges at statistik.uni-dortmund.de
Mon Apr 25 08:36:39 CEST 2005
Liaw, Andy wrote:
> One suggestion: After you break the check process, look at the file
>
> C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
>
> and try to see if you can run that in batch mode.
>
You can also look into GeneticsPed-Ex.Rout that tells you where the
stuff hangs.
Uwe
> Andy
>
>
>>From: Gorjanc Gregor
>>
>>Hello!
>>
>>I am building a package, which includes also one Fortran subroutine,
>>which works fine if I compile it as a shared library and load it into
>>R via dyn.load(). However, when I launch R CMD check it doesn't stop
>>with checking examples. It's just doing and doing ... I pasted the
>>whole output from R CMD check. Does anyone have any suggestions?
>>
>>I'm still using R 2.0.1.
>>
>>C:\Gregor\devel\GeneticsPed>Rcmd check GeneticsPed
>>* checking for working latex ... OK
>>* using log directory 'C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck'
>>* checking for file 'GeneticsPed/DESCRIPTION' ... OK
>>* checking if this is a source package ... OK
>>
>>installing R.css in C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck
>>
>>
>>---------- Making package GeneticsPed ------------
>> adding build stamp to DESCRIPTION
>> installing NAMESPACE file and metadata
>> making DLL ...
>>g77 -O2 -Wall -c meuwissen.f -o meuwissen.o
>>ar cr GeneticsPed.a meuwissen.o
>>ranlib GeneticsPed.a
>>gcc --shared -s -o GeneticsPed.dll GeneticsPed.def
>>GeneticsPed.a GeneticsPed_r
>>es.o -Lc:/Programs/R/rw2001/src/gnuwin32 -lg2c -lR
>> ... DLL made
>> installing DLL
>> installing R files
>> installing man source files
>> installing indices
>> installing help
>> >>> Building/Updating help pages for package 'GeneticsPed'
>> Formats: text html latex example chm
>> NAtoUnknown text html latex example
>> code.pedigree text html latex example
>> extend.pedigree text html latex example
>> generate.pedigree text html latex example
>> generation text html latex example
>> getcode.pedigree text html latex example
>> inbreeding text html latex
>>example chm
>> is.unknown text html latex example
>> kinship text html latex
>>example chm
>> pedigree text html latex
>>example chm
>> missing link(s): ?pedigree in kinship?
>> prop.pedigree text html latex example
>> relationshipAdditive text html latex
>>example chm
>>Microsoft HTML Help Compiler 4.74.8702
>>
>>Compiling c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm
>>
>>
>>Compile time: 0 minutes, 0 seconds
>>13 Topics
>>41 Local links
>>0 Internet links
>>1 Graphic
>>
>>
>>Created
>>c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm,
>>32,327 byte
>>s
>>Compression decreased file by 10,172 bytes.
>> adding MD5 sums
>>
>>* DONE (GeneticsPed)
>>
>>* checking package directory ... OK
>>* checking for portable file names ... OK
>>* checking package dependencies ... OK
>>* checking index information ... OK
>>* checking package subdirectories ... OK
>>* checking R files for syntax errors ... OK
>>* checking R files for library.dynam ... OK
>>* checking S3 generic/method consistency ... OK
>>* checking replacement functions ... OK
>>* checking foreign function calls ... OK
>>* checking Rd files ... OK
>>* checking for missing documentation entries ... OK
>>* checking for code/documentation mismatches ... OK
>>* checking Rd \usage sections ... OK
>>* checking for CRLF line endings in C sources/headers ... OK
>>* creating GeneticsPed-Ex.R ... OK
>>* checking examples ...
>>
>>--
>>Lep pozdrav / With regards,
>> Gregor Gorjanc
>>
>>--------------------------------------------------------------
>>----------
>>University of Ljubljana
>>Biotechnical Faculty URI: http://www.bfro.uni-lj.si/MR/ggorjan
>>Zootechnical Department email: gregor.gorjanc <at> bfro.uni-lj.si
>>Groblje 3 tel: +386 (0)1 72 17 861
>>SI-1230 Domzale fax: +386 (0)1 72 17 888
>>Slovenia
>>
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>>
>>
>
>
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