[R] R CMD check doesn't stop with checking examples

[Uwe Ligges]

Liaw, Andy wrote:
> One suggestion:  After you break the check process, look at the file
> 
> C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R
> 
> and try to see if you can run that in batch mode.
> 

You can also look into GeneticsPed-Ex.Rout that tells you where the 
stuff hangs.

Uwe



> Andy
> 
> 
>>From: Gorjanc Gregor
>>
>>Hello!
>>
>>I am building a package, which includes also one Fortran subroutine, 
>>which works fine if I compile it as a shared library and load it into
>>R via dyn.load(). However, when I launch R CMD check it doesn't stop 
>>with checking examples. It's just doing and doing ... I pasted the
>>whole output from R CMD check. Does anyone have any suggestions?
>>
>>I'm still using R 2.0.1.
>>
>>C:\Gregor\devel\GeneticsPed>Rcmd check GeneticsPed
>>* checking for working latex ... OK
>>* using log directory 'C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck'
>>* checking for file 'GeneticsPed/DESCRIPTION' ... OK
>>* checking if this is a source package ... OK
>>
>>installing R.css in C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck
>>
>>
>>---------- Making package GeneticsPed ------------
>>  adding build stamp to DESCRIPTION
>>  installing NAMESPACE file and metadata
>>  making DLL ...
>>g77 -O2 -Wall   -c meuwissen.f -o meuwissen.o
>>ar cr GeneticsPed.a meuwissen.o
>>ranlib GeneticsPed.a
>>gcc  --shared -s  -o GeneticsPed.dll GeneticsPed.def 
>>GeneticsPed.a GeneticsPed_r
>>es.o  -Lc:/Programs/R/rw2001/src/gnuwin32  -lg2c -lR
>>  ... DLL made
>>  installing DLL
>>  installing R files
>>  installing man source files
>>  installing indices
>>  installing help
>> >>> Building/Updating help pages for package 'GeneticsPed'
>>     Formats: text html latex example chm
>>  NAtoUnknown                       text    html    latex   example
>>  code.pedigree                     text    html    latex   example
>>  extend.pedigree                   text    html    latex   example
>>  generate.pedigree                 text    html    latex   example
>>  generation                        text    html    latex   example
>>  getcode.pedigree                  text    html    latex   example
>>  inbreeding                        text    html    latex   
>>example chm
>>  is.unknown                        text    html    latex   example
>>  kinship                           text    html    latex   
>>example chm
>>  pedigree                          text    html    latex   
>>example chm
>>     missing link(s):  ?pedigree in kinship?
>>  prop.pedigree                     text    html    latex   example
>>  relationshipAdditive              text    html    latex   
>>example chm
>>Microsoft HTML Help Compiler 4.74.8702
>>
>>Compiling c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm
>>
>>
>>Compile time: 0 minutes, 0 seconds
>>13      Topics
>>41      Local links
>>0       Internet links
>>1       Graphic
>>
>>
>>Created 
>>c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm, 
>>32,327 byte
>>s
>>Compression decreased file by 10,172 bytes.
>>  adding MD5 sums
>>
>>* DONE (GeneticsPed)
>>
>>* checking package directory ... OK
>>* checking for portable file names ... OK
>>* checking package dependencies ... OK
>>* checking index information ... OK
>>* checking package subdirectories ... OK
>>* checking R files for syntax errors ... OK
>>* checking R files for library.dynam ... OK
>>* checking S3 generic/method consistency ... OK
>>* checking replacement functions ... OK
>>* checking foreign function calls ... OK
>>* checking Rd files ... OK
>>* checking for missing documentation entries ... OK
>>* checking for code/documentation mismatches ... OK
>>* checking Rd \usage sections ... OK
>>* checking for CRLF line endings in C sources/headers ... OK
>>* creating GeneticsPed-Ex.R ... OK
>>* checking examples ...
>>
>>--
>>Lep pozdrav / With regards,
>>    Gregor Gorjanc
>>
>>--------------------------------------------------------------
>>----------
>>University of Ljubljana
>>Biotechnical Faculty       URI: http://www.bfro.uni-lj.si/MR/ggorjan
>>Zootechnical Department    email: gregor.gorjanc <at> bfro.uni-lj.si
>>Groblje 3                  tel: +386 (0)1 72 17 861
>>SI-1230 Domzale            fax: +386 (0)1 72 17 888
>>Slovenia
>>
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>>
>>
>>
> 
> 
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