[R] R CMD check doesn't stop with checking examples

[Liaw, Andy]

One suggestion:  After you break the check process, look at the file

C:\Gregor\devel\GeneticsPed\GeneticsPed.Rcheck\GeneticsPed-Ex.R

and try to see if you can run that in batch mode.

Andy

> From: Gorjanc Gregor
> 
> Hello!
> 
> I am building a package, which includes also one Fortran subroutine, 
> which works fine if I compile it as a shared library and load it into
> R via dyn.load(). However, when I launch R CMD check it doesn't stop 
> with checking examples. It's just doing and doing ... I pasted the
> whole output from R CMD check. Does anyone have any suggestions?
> 
> I'm still using R 2.0.1.
> 
> C:\Gregor\devel\GeneticsPed>Rcmd check GeneticsPed
> * checking for working latex ... OK
> * using log directory 'C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck'
> * checking for file 'GeneticsPed/DESCRIPTION' ... OK
> * checking if this is a source package ... OK
> 
> installing R.css in C:/Gregor/devel/GeneticsPed/GeneticsPed.Rcheck
> 
> 
> ---------- Making package GeneticsPed ------------
>   adding build stamp to DESCRIPTION
>   installing NAMESPACE file and metadata
>   making DLL ...
> g77 -O2 -Wall   -c meuwissen.f -o meuwissen.o
> ar cr GeneticsPed.a meuwissen.o
> ranlib GeneticsPed.a
> gcc  --shared -s  -o GeneticsPed.dll GeneticsPed.def 
> GeneticsPed.a GeneticsPed_r
> es.o  -Lc:/Programs/R/rw2001/src/gnuwin32  -lg2c -lR
>   ... DLL made
>   installing DLL
>   installing R files
>   installing man source files
>   installing indices
>   installing help
>  >>> Building/Updating help pages for package 'GeneticsPed'
>      Formats: text html latex example chm
>   NAtoUnknown                       text    html    latex   example
>   code.pedigree                     text    html    latex   example
>   extend.pedigree                   text    html    latex   example
>   generate.pedigree                 text    html    latex   example
>   generation                        text    html    latex   example
>   getcode.pedigree                  text    html    latex   example
>   inbreeding                        text    html    latex   
> example chm
>   is.unknown                        text    html    latex   example
>   kinship                           text    html    latex   
> example chm
>   pedigree                          text    html    latex   
> example chm
>      missing link(s):  ?pedigree in kinship?
>   prop.pedigree                     text    html    latex   example
>   relationshipAdditive              text    html    latex   
> example chm
> Microsoft HTML Help Compiler 4.74.8702
> 
> Compiling c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm
> 
> 
> Compile time: 0 minutes, 0 seconds
> 13      Topics
> 41      Local links
> 0       Internet links
> 1       Graphic
> 
> 
> Created 
> c:\Gregor\devel\GeneticsPed\GeneticsPed\chm\GeneticsPed.chm, 
> 32,327 byte
> s
> Compression decreased file by 10,172 bytes.
>   adding MD5 sums
> 
> * DONE (GeneticsPed)
> 
> * checking package directory ... OK
> * checking for portable file names ... OK
> * checking package dependencies ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for syntax errors ... OK
> * checking R files for library.dynam ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking Rd files ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking for CRLF line endings in C sources/headers ... OK
> * creating GeneticsPed-Ex.R ... OK
> * checking examples ...
> 
> --
> Lep pozdrav / With regards,
>     Gregor Gorjanc
> 
> --------------------------------------------------------------
> ----------
> University of Ljubljana
> Biotechnical Faculty       URI: http://www.bfro.uni-lj.si/MR/ggorjan
> Zootechnical Department    email: gregor.gorjanc <at> bfro.uni-lj.si
> Groblje 3                  tel: +386 (0)1 72 17 861
> SI-1230 Domzale            fax: +386 (0)1 72 17 888
> Slovenia
> 
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