[R] SMP, Single System Image clustering, multithreading
Roger D. Peng
rpeng at jhsph.edu
Tue Jul 13 14:21:17 CEST 2004
I think there are plans to work on multithreading in R (see
http://developer.r-project.org/) but it's probably a long-term
project. For now, you might want to try building R with a
multithreaded BLAS.
-roger
Khamenia, Valery wrote:
> Hi All,
>
> I have looked through the following thread:
>
> http://tolstoy.newcastle.edu.au/R/help/02b/4551.html
>
> and would like to ask after 1.5 year the same question:
>
> Are there any plans to involve multithread
> computations in R?
>
> Few word about my motivation:
>
> I use R on my OpenSSI cluster with 7 CPUs, so one
> could simply think of this cluster as of single computer
> with 7 CPU. My own C++ maths run good in parallel
> on the cluster. What is even better for me: my C++ code
> has *no* any statements about parallelization.
> All parallezation is done at command line. When I
> start a new piece of calculation from command line,
> the process is migrated to a free cluster node
> automatically, it migrates even during the calculation.
>
> The whole project is calculated nearly up to 7 time
> quicker then on a single CPU. Thus, I do see the boost
> clearly.
>
> However the same approach applied to R will force me
> to use batch mode instead of nice interactive mode.
>
> Now I am writing this mail and R is still busy with
> stats in usual interactive mode. Other 6 processors
> are idling unfortunately. It would be really nice
> to change this situation.
>
> my best regards,
> Valery.
>
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