[R] OT: apt-get and R in Debian

Stefano Calza stecalza at tiscali.it
Thu Nov 27 15:44:38 CET 2003


> Can you give us more details, please?  Which version of Debian
> (stable, testing or unstable) are you running and what are the
> relevant parts of your /etc/apt/sources.list file?  (Just send us the
> whole file if you are not sure what parts are relevant.)

Ok. Find attach my source.list + the output from apt-cache show 
r-base-core + apt-cache policy r-base-core.
I use Debian/testing version + some unstable package.

> 
> To others on the cc: list:  May I suggest that we ask Martin to create
> an email list with a name like r-debian for Debian-specific questions
> about R installation?

Yes, it would be a great idea!

Thanks,
Ste

> 
> -- 
> Douglas Bates                            bates at stat.wisc.edu
> Statistics Department                    608/262-2598
> University of Wisconsin - Madison        http://www.stat.wisc.edu/~bates/

-- 
Stefano Calza,
Sezione di Statistica Medica
Dip. di Scienze Biomediche e Biotecnologie
Università degli Studi di Brescia - Italy
Viale Europa, 11 25123 Brescia
email: calza at med.unibs.it
Telefono/Phone: +390303717532
Fax: +390303701157
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deb http://ftp.it.debian.org/debian/ stable main non-free contrib
deb-src http://ftp.it.debian.org/debian/ stable main non-free contrib
deb http://non-us.debian.org/debian-non-US stable/non-US main contrib non-free
deb-src http://non-us.debian.org/debian-non-US stable/non-US main contrib non-free

deb http://ftp.it.debian.org/debian/ testing main non-free contrib
deb http://ftp.it.debian.org/debian-non-US testing/non-US main contrib non-free
deb-src http://ftp.it.debian.org/debian testing main contrib non-free
deb-src http://ftp.it.debian.org/debian-non-US testing/non-US main contrib non-free

deb http://ftp.it.debian.org/debian/ unstable main non-free contrib
deb http://ftp.it.debian.org/debian-non-US unstable/non-US main contrib non-free
deb-src http://ftp.it.debian.org/debian unstable main contrib non-free
deb-src http://ftp.it.debian.org/debian-non-US unstable/non-US main contrib non-free

# R

#deb http://cran.at.r-project.org/bin/linux/debian stable main
#deb http://cran.at.r-project.org/bin/linux/debian testing main
#deb http://cran.at.r-project.org/bin/linux/debian unstable main

deb http://security.debian.org/ stable/updates main contrib non-free


## Java Environment

#deb http://mirrors.publicshout.org/java-linux/debian testing main non-free
#deb http://mirrors.publicshout.org/java-linux/debian unstable main non-free

## Bioconductor

deb http://lab.analytics.washington.edu/debian-local ./
-------------- next part --------------
Package: r-base-core
Priority: optional
Section: math
Installed-Size: 23916
Maintainer: Dirk Eddelbuettel <edd at debian.org>
Architecture: i386
Source: r-base
Version: 1.8.0.cvs.20031114-1
Replaces: r-base (<= 1.4.1-1)
Depends: perl, zlib-bin, libbz2-1.0, libc6 (>= 2.3.2.ds1-4), libg2c0 (>= 1:3.3.2-1), libgcc1 (>= 1:3.3.2-1), libjpeg62, libncurses5 (>= 5.3.20030510-1), libpcre3 (>= 4.0), libpng10-0 (>= 1.0.15-4), libreadline4 (>= 4.3-1), tcl8.4 (>= 8.4.2), tk8.4 (>= 8.4.2), xlibs (>> 4.1.0), zlib1g (>= 1:1.1.4)
Recommends: r-recommended, r-base-dev
Suggests: libpaperg, ess, r-doc-info | r-doc-pdf | r-doc-html
Filename: pool/main/r/r-base/r-base-core_1.8.0.cvs.20031114-1_i386.deb
Size: 5939210
MD5sum: 8cc59556c1385f4ec50b84f69380c691
Description: GNU R core of statistical computing language and environment
 R is `GNU S' - A language and environment for statistical computing
 and graphics. R is similar to the award-winning S system, which was
 developed at Bell Laboratories by John Chambers et al. It provides a
 wide variety of statistical and graphical techniques (linear and
 nonlinear modelling, statistical tests, time series analysis,
 classification, clustering, ...).
 .
 R is designed as a true computer language with control-flow
 constructions for iteration and alternation, and it allows users to
 add additional functionality by defining new functions. For
 computationally intensive tasks, C, C++ and Fortran code can be
 linked and called at run time.
 .
 S is the statistician's Matlab and R is to S what Octave is to Matlab.
 .
 This package provides the core GNU R system from which only the optional
 documentation packages r-base-html, r-base-latex, r-doc-html, r-doc-pdf
 and r-doc-info have been split off to somewhat reduce the size of this
 package.

Package: r-base-core
Status: install ok installed
Priority: optional
Section: math
Installed-Size: 23912
Maintainer: Dirk Eddelbuettel <edd at debian.org>
Source: r-base
Version: 1.8.0.cvs.20031114-1
Replaces: r-base (<= 1.4.1-1)
Depends: perl, zlib-bin, libbz2-1.0, libc6 (>= 2.3.2.ds1-4), libg2c0 (>= 1:3.3.2-1), libgcc1 (>= 1:3.3.2-1), libjpeg62, libncurses5 (>= 5.3.20030510-1), libpcre3 (>= 4.0), libpng12-0 (>= 1.2.5.0-4), libreadline4 (>= 4.3-1), tcl8.4 (>= 8.4.2), tk8.4 (>= 8.4.2), xlibs (>> 4.1.0), zlib1g (>= 1:1.1.4)
Recommends: r-recommended, r-base-dev
Suggests: libpaperg, ess, r-doc-info | r-doc-pdf | r-doc-html
Conffiles:
 /etc/R/Makeconf c819eaeb69d4f1514795e3a9eb7e2c9c
 /etc/R/Renviron 8ca0b400f24f00d60a2bacdcbb03db85
Description: GNU R core of statistical computing language and environment
 R is `GNU S' - A language and environment for statistical computing
 and graphics. R is similar to the award-winning S system, which was
 developed at Bell Laboratories by John Chambers et al. It provides a
 wide variety of statistical and graphical techniques (linear and
 nonlinear modelling, statistical tests, time series analysis,
 classification, clustering, ...).
 .
 R is designed as a true computer language with control-flow
 constructions for iteration and alternation, and it allows users to
 add additional functionality by defining new functions. For
 computationally intensive tasks, C, C++ and Fortran code can be
 linked and called at run time.
 .
 S is the statistician's Matlab and R is to S what Octave is to Matlab.
 .
 This package provides the core GNU R system from which only the optional
 documentation packages r-base-html, r-base-latex, r-doc-html, r-doc-pdf
 and r-doc-info have been split off to somewhat reduce the size of this
 package.

Package: r-base-core
Priority: optional
Section: math
Installed-Size: 21944
Maintainer: Dirk Eddelbuettel <edd at debian.org>
Architecture: i386
Source: r-base
Version: 1.7.1-1
Replaces: r-base (<= 1.4.1-1)
Depends: perl, zlib-bin, atlas2-base | atlas2, libbz2-1.0, libc6 (>= 2.3.1-1), libg2c0 (>= 1:3.3-0pre9), libgcc1 (>= 1:3.3-0pre9), libjpeg62, libncurses5 (>= 5.3.20030510-1), libpcre3, libpng10-0 (>= 1.0.15-4), libreadline4 (>= 4.3-1), tcl8.4 (>= 8.4.2), tk8.4 (>= 8.4.2), xlibs (>> 4.1.0), zlib1g (>= 1:1.1.4)
Recommends: r-recommended, r-base-dev
Suggests: libpaperg, ess, r-doc-info | r-doc-pdf | r-doc-html
Filename: pool/main/r/r-base/r-base-core_1.7.1-1_i386.deb
Size: 5415844
MD5sum: c620e3533140e802038d0c0adce740a5
Description: GNU R core of statistical computing language and environment
 R is `GNU S' - A language and environment for statistical computing
 and graphics. R is similar to the award-winning S system, which was
 developed at Bell Laboratories by John Chambers et al. It provides a
 wide variety of statistical and graphical techniques (linear and
 nonlinear modelling, statistical tests, time series analysis,
 classification, clustering, ...).
 .
 R is designed as a true computer language with control-flow
 constructions for iteration and alternation, and it allows users to
 add additional functionality by defining new functions. For
 computationally intensive tasks, C, C++ and Fortran code can be
 linked and called at run time.
 .
 S is the statistician's Matlab and R is to S what Octave is to Matlab.
 .
 This package provides the core GNU R system from which only the optional
 documentation packages r-base-html, r-base-latex, r-doc-html, r-doc-pdf
 and r-doc-info have been split off to somewhat reduce the size of this
 package.

Package: r-base-core
Priority: optional
Section: math
Installed-Size: 19884
Maintainer: Dirk Eddelbuettel <edd at debian.org>
Architecture: i386
Source: r-base
Version: 1.5.1-0woody1
Replaces: r-base (<= 1.4.1-1)
Depends: perl, zlib-bin, atlas2-base | blas | blas2, libc6 (>= 2.2.4-4), libjpeg62, libncurses5 (>= 5.2.20020112a-1), libpng2(>=1.0.12), libreadline4 (>= 4.2a-4), tcl8.3 (>= 8.3.0), tk8.3 (>= 8.3.0), xlibs (>> 4.1.0), zlib1g (>= 1:1.1.4)
Recommends: r-recommended, r-base-dev
Filename: pool/main/r/r-base/r-base-core_1.5.1-0woody1_i386.deb
Size: 4697006
MD5sum: ccfd24d8fc00c30c7965854b10516d63
Description: GNU R core of statistical computing language and environment
 R is `GNU S' - A language and environment for statistical computing
 and graphics. R is similar to the award-winning S system, which was
 developed at Bell Laboratories by John Chambers et al. It provides a
 wide variety of statistical and graphical techniques (linear and
 nonlinear modelling, statistical tests, time series analysis,
 classification, clustering, ...).
 .
 R is designed as a true computer language with control-flow
 constructions for iteration and alternation, and it allows users to
 add additional functionality by defining new functions. For
 computationally intensive tasks, C, C++ and Fortran code can be
 linked and called at run time.
 .
 S is the statistician's Matlab and R is to S what Octave is to Matlab.
 .
 This package provides the core GNU R system from which only the optional
 documentation packages r-base-html, r-base-latex, r-doc-html, r-doc-pdf
 and r-doc-info have been split off to somewhat reduce the size of this
 package.

-------------- next part --------------
r-base-core:
  Installato: 1.8.0.cvs.20031114-1
  Candidato: 1.8.0.cvs.20031114-1
  Tabella Versione:
     1.8.0.cvs.20031114-1 0
        500 http://ftp.it.debian.org unstable/main Packages
 *** 1.8.0.cvs.20031114-1 0
        100 /var/lib/dpkg/status
     1.7.1-1 0
        990 http://ftp.it.debian.org testing/main Packages
     1.5.1-0woody1 0
        500 http://ftp.it.debian.org stable/main Packages


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