[Rd] compile failure for R-devel

Tomas Kalibera tom@@@k@||ber@ @end|ng |rom gm@||@com
Mon Jan 17 19:08:34 CET 2022


On 1/17/22 7:06 PM, Therneau, Terry M., Ph.D. via R-devel wrote:
> I reran my usual steps to update R this AM, preparatory to doing checks on the rpart
> package.  (I had made changes from Free to R_Free, requested by Brian R.)   However, the
> process fails:

Make distclean (or otherwise a fresh build) should resolve this.

Best
Tomas

>
>    svn up
> tools/rsync-recommended
> ./configure
> make
>
> The make finishes with the following:
>
> gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include
> -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include  -fvisibility=hidden -fpic  -g
> -O2  -c http.c -o http.o
> gcc -shared -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o
> getfmts.o http.o gramLatex.o gramRd.o pdscan.o
> make[6]: Leaving directory '/usr/local/src/R-devel/src/library/tools/src'
> make[5]: Leaving directory '/usr/local/src/R-devel/src/library/tools/src'
> make[4]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
> make[4]: Entering directory '/usr/local/src/R-devel/src/library/tools'
> installing 'sysdata.rda'
> Error: 'hashtab' is not an exported object from 'namespace:utils'
> Execution halted
> make[4]: *** [../../../share/make/basepkg.mk:151: sysdata] Error 1
> make[4]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
> make[3]: *** [Makefile:36: all] Error 2
> make[3]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
> make[2]: *** [Makefile:37: R] Error 1
> make[2]: Leaving directory '/usr/local/src/R-devel/src/library'
> make[1]: *** [Makefile:28: R] Error 1
> make[1]: Leaving directory '/usr/local/src/R-devel/src'
> make: *** [Makefile:61: R] Error 1--
>
> -------
>   > sessionInfo()
> R Under development (unstable) (2022-01-17 r81511)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 20.04.3 LTS
>
> Matrix products: default
> BLAS:   /usr/local/src/R-devel/lib/libRblas.so
> LAPACK: /usr/local/src/R-devel/lib/libRlapack.so
>
> locale:
>    [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>    [3] LC_TIME=en_US.UTF-8        LC_COLLATE=C
>    [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>    [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>    [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods base
>
> loaded via a namespace (and not attached):
> [1] compiler_4.2.0
>   >
>
> Any hints?
>
> Terry
>
> Terry M Therneau, PhD
> Department of Quantitative Health Sciences
> Mayo Clinic
> therneau using mayo.edu
>
> "TERR-ree THUR-noh"
>
>
> 	[[alternative HTML version deleted]]
>
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