[Rd] compile failure for R-devel
Therneau, Terry M., Ph.D.
therne@u @end|ng |rom m@yo@edu
Mon Jan 17 19:06:57 CET 2022
I reran my usual steps to update R this AM, preparatory to doing checks on the rpart
package. (I had made changes from Free to R_Free, requested by Brian R.) However, the
process fails:
svn up
tools/rsync-recommended
./configure
make
The make finishes with the following:
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include
-DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g
-O2 -c http.c -o http.o
gcc -shared -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o
getfmts.o http.o gramLatex.o gramRd.o pdscan.o
make[6]: Leaving directory '/usr/local/src/R-devel/src/library/tools/src'
make[5]: Leaving directory '/usr/local/src/R-devel/src/library/tools/src'
make[4]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
make[4]: Entering directory '/usr/local/src/R-devel/src/library/tools'
installing 'sysdata.rda'
Error: 'hashtab' is not an exported object from 'namespace:utils'
Execution halted
make[4]: *** [../../../share/make/basepkg.mk:151: sysdata] Error 1
make[4]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
make[3]: *** [Makefile:36: all] Error 2
make[3]: Leaving directory '/usr/local/src/R-devel/src/library/tools'
make[2]: *** [Makefile:37: R] Error 1
make[2]: Leaving directory '/usr/local/src/R-devel/src/library'
make[1]: *** [Makefile:28: R] Error 1
make[1]: Leaving directory '/usr/local/src/R-devel/src'
make: *** [Makefile:61: R] Error 1--
-------
> sessionInfo()
R Under development (unstable) (2022-01-17 r81511)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.3 LTS
Matrix products: default
BLAS: /usr/local/src/R-devel/lib/libRblas.so
LAPACK: /usr/local/src/R-devel/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=C
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.0
>
Any hints?
Terry
Terry M Therneau, PhD
Department of Quantitative Health Sciences
Mayo Clinic
therneau using mayo.edu
"TERR-ree THUR-noh"
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