[Rd] Slow try in combination with do.call
@osp@m m@iii@g oii @itieid-im@de
@osp@m m@iii@g oii @itieid-im@de
Tue Oct 12 12:11:10 CEST 2021
In fact an attentive user reported the same type of (slow due to deparse) problem in may tryCatchLog package recently when using a large sparse matrix
https://github.com/aryoda/tryCatchLog/issues/68
and I have fixed it by explicitly using the nlines arg of deparse() instead of using as.character()
which implicitly calls deparse() for a call stack.
Looking for a fix I think I may have found inconsistent deparse default arguments in base R between as.character() and deparse():
A direct deparse call in R uses
control = c("keepNA", "keepInteger", "niceNames", "showAttributes")
as default (see ?.deparseOpts for details).
The as.character() implementation in the C code of base R calls the internal deparse C function
with another default for .deparseOpts:
The SIMPLEDEPARSE C constant which corresponds to control = NULL.
https://github.com/wch/r-source/blob/54f94f0433c487fe55553b0df9bae477c9babdd1/src/main/deparse.c#L345
This is clearly no bug but maybe the as.character() implementation should use the default args of deparse() for consistency (just a proposal!)...
BTW: You can find my analysis result with the call path and links to the R source code in the github issue:
https://github.com/aryoda/tryCatchLog/issues/68#issuecomment-930593002
On Thu, 2021-09-16 at 18:04 +0200, Martin Maechler wrote:
> > > > > > Martin Maechler
> > > > > > on Thu, 16 Sep 2021 17:48:41 +0200 writes:
> > > > > > Alexander Kaever
> > > > > > on Thu, 16 Sep 2021 14:00:03 +0000 writes:
>
> >> Hi,
> >> It seems like a try(do.call(f, args)) can be very slow on error depending on the args size. This is related to a complete deparse of the call
> using deparse(call)[1L] within the try function. How about replacing deparse(call)[1L] by deparse(call, nlines = 1)?
>
> >> Best,
> >> Alex
>
> > an *excellent* idea!
>
> > I have checked that the resulting try() object continues to contain the
> > long large call; indeed that is not the problem, but the
> > deparse()ing *is* as you say above.
>
> > {The experts typically use tryCatch() directly, instead of try() ,
> > which may be the reason other experienced R developers have not
> > stumbled over this ...}
>
> > Thanks a lot, notably also for the clear repr.ex. below.
>
> > Best regards,
> > Martin
>
> OTOH, I find so many cases of deparse(*)[1] (or similar) in
> R's own sources, I'm wondering
> if I'm forgetting something ... and using nlines=* is not always
> faster & equivalent and hence better ??
>
> Martin
>
>
>
>
> >> Example:
>
> >> fun <- function(x) {
> >> stop("testing")
> >> }
> >> d <- rep(list(mtcars), 10000)
> >> object.size(d)
> >> # 72MB
>
> >> system.time({
> >> try(do.call(fun, args = list(x = d)))
> >> })
> >> # 8s
>
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