[Rd] package compositions removed CRAN. Explain please the output?

[Paul Johnson]

I notice  compositions was removed on CRAN, that's one I want to try out.

I downloaded the last tarball, the build output doesn't look that bad.
A warning, no errors.


$ R CMD build compositions
* checking for file ‘compositions/DESCRIPTION’ ... OK
* preparing ‘compositions’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘compositions_1.40-0.tar.gz’

$ R CMD check --as-cran compositions_1.40-0.tar.gz
* using log directory ‘/tmp/compositions.Rcheck’
* using R version 3.1.0 (2014-04-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘compositions/DESCRIPTION’ ... OK
* this is package ‘compositions’ version ‘1.40-0’
* checking CRAN incoming feasibility ... WARNING
Maintainer: ‘K. Gerald van den Boogaart <support at boogaart.de>’
New submission
Package was archived on CRAN
Insufficient package version (submitted: 1.40.0, existing: 1.40.0)
CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2014-05-01 as undefined-behaviour errors
    were not corrected (and previouslu archived on 2014-03-07).
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘compositions’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
SimulatedAmounts 18.810  0.188  19.064
rmahalanobis      8.573  0.016   8.619
replot            7.078  0.012   7.113
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘AitchisonTest.R’
  Running ‘CheckGeometry.R’ [38s/38s]
  Running ‘RobustTest.R’
  Running ‘TestMissing.R’ [39s/40s]
  Running ‘TestSimp.R’ [12s/12s]
  Running ‘acheck.R’
  Running ‘geostat.R’
  Running ‘missings.R’
  Running ‘quickcheck.R’
 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/tmp/compositions.Rcheck/00check.log’
for details.






-- 
Paul E. Johnson
Professor, Political Science      Assoc. Director
1541 Lilac Lane, Room 504      Center for Research Methods
University of Kansas                 University of Kansas
http://pj.freefaculty.org               http://quant.ku.edu