[Rd] cygwing warming when creating a package in windows
murdoch.duncan at gmail.com
Thu Oct 20 21:14:30 CEST 2011
On 20/10/2011 3:06 PM, Joshua Wiley wrote:
> That Cygwin warning is expected on Windows.
It can be suppressed by setting an environment variable named CYGWIN
with value nodosfilewarning, e.g. by doing this at the command line:
> You can still build the package and it should be fine, although it looks like the documentation may need a bit of tweaking to pass R CMD check. 2.13.2 is the latest version of R, and I would recommend using it over 2.12.2. Both for the improvements and because others on this list tend to have the later version so helping is easier.
> On Oct 18, 2011, at 7:56, Alba Martinez-Ruiz<amartine at ucsc.cl> wrote:
> > Dear All,
> > I am a beginner creating R packages. I followed the Leisch (2009) tutorial
> > and the document “Writing R Extensions” to write an example.
> > I installed R 2.12.2 (I also tried R2.13.2), the last version of Rtools and
> > the recommended packages in a PC with Windows 7 Home Premium.
> > I can run R CMD INSTALL linmod in the command prompt and the R CMD check
> > linmod. The following outputs are obtained:
> > * installing *source* package 'linmod' ...
> > ** R
> > ** preparing package for lazy loading
> > ** help
> > *** installing help indices
> > ** building package indices ...
> > ** testing if installed package can be loaded
> > * DONE (linmod)
> > * using log directory 'D:/mypkg/linmod.Rcheck'
> > * using R version 2.12.2 (2011-02-25)
> > * using platform: i386-pc-mingw32 (32-bit)
> > * using session charset: ISO8859-1
> > * checking for file 'linmod/DESCRIPTION' ... OK
> > * checking extension type ... Package
> > * this is package 'linmod' version '1.0'
> > * checking package dependencies ... OK
> > * checking if this is a source package ... OK
> > * checking for executable files ... OK
> > * checking whether package 'linmod' can be installed ... OK
> > * checking package directory ... OK
> > * checking for portable file names ... OK
> > * checking DESCRIPTION meta-information ... OK
> > * checking top-level files ... OK
> > * checking index information ... OK
> > * checking package subdirectories ... OK
> > * checking R files for non-ASCII characters ... OK
> > * checking R files for syntax errors ... OK
> > * checking whether the package can be loaded ... OK
> > * checking whether the package can be loaded with stated dependencies ... OK
> > * checking whether the package can be unloaded cleanly ... OK
> > * checking for unstated dependencies in R code ... OK
> > * checking S3 generic/method consistency ... OK
> > * checking replacement functions ... OK
> > * checking foreign function calls ... OK
> > * checking R code for possible problems ... OK
> > * checking Rd files ... OK
> > * checking Rd metadata ... WARNING
> > Rd files with duplicated alias 'linmod.default':
> > linmod.Rd linmod.default.Rd
> > Rd files with duplicated alias 'linmod.formula':
> > linmod.Rd linmod.formula.Rd
> > Rd files with duplicated alias 'print.linmod':
> > linmod.Rd print.linmod.Rd
> > Rd files with duplicated alias 'summary.linmod':
> > linmod.Rd summary.linmod.Rd
> > * checking Rd cross-references ... WARNING
> > Unknown package(s) '<pkg>' in Rd xrefs
> > * checking for missing documentation entries ... OK
> > * checking for code/documentation mismatches ... OK
> > * checking Rd \usage sections ... OK
> > * checking Rd contents ... OK
> > * checking for unstated dependencies in examples ... OK
> > * checking examples ... OK
> > * checking PDF version of manual ... OK
> > WARNING: There were 2 warnings, see 'D:/my pkg/linmod.Rcheck/00check.log'
> > for details
> > I don’t know if it is possible to run R CMD build linmod even though I have
> > two warning. But if I do it, I get the following cygwin warning:
> > cygwin warning:
> > MS-DOS style path detected: D:/mypkg/linmod_1.0.tar
> > Preferred POSIX equivalent is: /cygdrive/d/mypkg/linmod_1.0.tar
> > CYGWIN environment variable option “nodosfilewarning” turns off this
> > warning.
> > Consult the user’s guide for more details about POSIX paths:
> > http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> > I am not a Linux expert, and I don’t how to fix this error (I couldn’t find
> > any help in the manuals or forums, at least for me). Please, any help would
> > be really appreciated.
> > Many thanks in advance.
> > Alba Martinez-Ruiz
> > -------------------------
> > Facultad de Ingeniería
> > Universidad Católica de la Ssma. Concepción
> > Alonso de Rivera 2850,
> > C.P. 409-0541 Concepción, Chile
> > Tel: + 0056 41 2345232
> > Fax: + 0056 41 2345300
> > --
> > View this message in context: http://r.789695.n4.nabble.com/cygwing-warming-when-creating-a-package-in-windows-tp3915660p3915660.html
> > Sent from the R devel mailing list archive at Nabble.com.
> > ______________________________________________
> > R-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
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