[Rd] Strange issues with new R-based 'R CMD build' and 'R CMD check' scripts on Windows
Hervé Pagès
hpages at fhcrc.org
Mon Jul 12 22:51:16 CEST 2010
Hi,
Kind of related to the new R-based 'R CMD build' script being
sometimes confused on Windows (as reported here a couple of weeks
ago https://stat.ethz.ch/pipermail/r-devel/2010-June/057759.html),
I also started to observe that the new R-based 'R CMD check' script
gets also confused sometimes on Windows in a random way.
It seems that sometimes (maybe 1% of the times) running 'R CMD check'
is actually running another script, not the 'check' script, e.g.,
here
http://bioconductor.org/checkResults/2.7/bioc-LATEST/geneplotter/gewurz-checksrc.html
the output of the command looks like if 'R CMD build' was run instead
of 'R CMD check'.
Here
http://bioconductor.org/checkResults/2.7/bioc-LATEST/lumi/gewurz-checksrc.html
it looks like if 'R CMD Rd2txt' was run.
Same here
http://bioconductor.org/checkResults/2.7/bioc-LATEST/HTqPCR/liverpool-checksrc.html
and here
http://bioconductor.org/checkResults/2.7/bioc-LATEST/iterativeBMAsurv/liverpool-checksrc.html
Like with the new R-based 'R CMD build' script, the problem seems
to happen randomly for a couple of packages every day. It seems to
affect our 2 Windows build machines, 32-bit and 64-bit. Both are
using R-2.12.0 (2010-07-06 r52464).
Cheers,
H.
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fhcrc.org
Phone: (206) 667-5791
Fax: (206) 667-1319
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