[Rd] help compiling package with g77
edd at debian.org
Tue Jun 6 18:23:52 CEST 2006
On 6 June 2006 at 12:00, Ben Bolker wrote:
| I have a package with some embedded legacy FORTRAN code
| (for computing complex Bessel functions, written in 2003
| by C. Bond to implement the algorithms of Zhang and Jin 1996).
| It worked well until recently [despite warnings about deprecated
| headers "includes at least one deprecated or antiquated header" --
| when I tried to fix these the code stopped working, so I left
| them alone]. Now an upgrade of my Debian system has apparently
| got R switched over from using g77 to gfortran. The old code
Ah, yes, you may get to blame me live and in person at Use R ...
More seriously, there was a bit of discussion on the debian-science list
where I asked for help with a similar "works with g77, fails with gfortran"
problem on another CRAN package.
I am open to switching the package back to g77 -- but I'd love to hear from
real Fortran users whether or not they'd support (or oppose) that. We can
continue here or on the r-sig-debian list.
| has EQUIVALENCE functions in it that gfortran doesn't like ...
| (I know, the right thing would be to go back and understand all
| the code and rewrite it, but I'm not sure I can bear it.)
| My first attempt was to hack things by replacing /usr/bin/gfortran
| (a link to /usr/bin/gfortran-4.0) with a link to g77; this helped
| things get farther but got me to an unresolved call to do_lio.
| Based on information in the archives from BDR, I commented out
| unnecessary PRINT commands in the FORTRAN code, but this just
| led to another unresolved symbol (e_wfse ???) -- I suspect that
| this is a symptom of R still using gfortran libraries instead
| of g77 libraries.
| Now I'm trying to figure out what I can do in the Makevars
| file in the package directory to force use of g77 *and* the
| appropriate libraries ... putting
| in [pkgname]/src/Makevars doesn't seem to have any effect.
| Even if I force the use of g77, I'm not sure whether it will
| get the right libraries or not ... perhaps I should recompile
| R with F77=/usr/bin/g77 all the way?
Yes, it is pretty trivial. Do
$ apt-get source r-base
$ cd r-base-2.3.1
$ edit debian/control
# remove the two 'gfortran (>= ...)' with g77
$ dpkg-buildpackage -rfakeroot -us -uc -tc
# may need to install build dependencies
and install the local packages -- thanks to Kurt's configure magic, R should
figure out the rest.
I would also edit debian/changelog; if you set the version number high enough
you want get an auto-upgrade to a Debian revision I may make.
| I have poked around in The Fine Manuals quite a bit ... if anyone
| has pointers I would be grateful. This'll teach me to upgrade.
Upgrades are the Right Thing (TM). Just talk to your friendly neighbourhood
maintainer if you think the package went astray.
Hell, there are no rules here - we're trying to accomplish something.
-- Thomas A. Edison
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