[Rd] Implementing R on IBM p690 cluster Jump
Uwe Ligges
ligges at statistik.uni-dortmund.de
Wed May 11 10:12:22 CEST 2005
Ralf Seppelt wrote:
> Dear All,
>
> we're trying to implement R on the IBM p690 cluster "Jump" at the
> research centre in Jülich, Germany (c.f.
> http://www.fz-juelich.de/nic/Supercomputer/computer-e.html)
> using the most recent version of R (2.1.0) and precisly following the
> installation instructions.
How much cpu time for further R development do we get on that machine if
we can help? ;-)
Uwe Ligges
> After ./configure we get the final message:
> ----------------
> R is now configured for powerpc-ibm-aix5.2.0.0
>
> Source directory: .
> Installation directory: /usr/local
>
> C compiler: gcc -mno-fp-in-toc -g -O2
> C++ compiler: g++ -g -O2
> Fortran compiler: f77 -g
>
> Interfaces supported: X11, tcltk
> External libraries: readline, BLAS(ESSL)
> Additional capabilities: PNG, JPEG, MBCS, NLS
> Options enabled: R profiling
>
> Recommended packages: yes
>
> configure: WARNING: you cannot build info or html versions of the R manuals
> configure: WARNING: I could not determine a browser
>
> --------------
> After make we get
>
> ufzaloe at j36.!:
> ufzaloe at j36.!: make
> ...
> gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
> -Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so dataentry.lo
> devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11 -ljpeg -lpng -lz
> ld: 0711-317 ERROR: Undefined symbol: .log10
> ld: 0711-317 ERROR: Undefined symbol: .floor
> ld: 0711-317 ERROR: Undefined symbol: .libintl_gettext
> ld: 0711-317 ERROR: Undefined symbol: .pow
> ld: 0711-317 ERROR: Undefined symbol: .sin
> ld: 0711-317 ERROR: Undefined symbol: .cos
> ld: 0711-317 ERROR: Undefined symbol: .tan
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
> information.
> collect2: ld returned 8 exit status
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 2.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> ---------------
>
> Before bugging the administiors in Jülich, we would like to ask the R
> consortium: Are there any related experiences from people who worked on
> the implementation of R on different platforms?
>
> Thanks for help
>
> Ralf Seppelt & Carsten Dormann
>
> PS: the configure log-file is attached to this mail.
>
>
>
> ------------------------------------------------------------------------
>
> ./configure
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> config.status: creating src/library/datasets/Makefile
> config.status: creating src/library/graphics/DESCRIPTION
> config.status: creating src/library/graphics/Makefile
> config.status: creating src/library/grDevices/DESCRIPTION
> config.status: creating src/library/grDevices/Makefile
> config.status: creating src/library/grDevices/src/Makefile
> config.status: creating src/library/grid/DESCRIPTION
> config.status: creating src/library/grid/Makefile
> config.status: creating src/library/grid/src/Makefile
> config.status: creating src/library/methods/DESCRIPTION
> config.status: creating src/library/methods/Makefile
> config.status: creating src/library/methods/src/Makefile
> config.status: creating src/library/profile/Makefile
> config.status: creating src/library/stats/DESCRIPTION
> config.status: creating src/library/stats/Makefile
> config.status: creating src/library/stats/src/Makefile
> config.status: creating src/library/stats4/DESCRIPTION
> config.status: creating src/library/stats4/Makefile
> config.status: creating src/library/splines/DESCRIPTION
> config.status: creating src/library/splines/Makefile
> config.status: creating src/library/splines/src/Makefile
> config.status: creating src/library/tcltk/DESCRIPTION
> config.status: creating src/library/tcltk/Makefile
> config.status: creating src/library/tcltk/src/Makefile
> config.status: creating src/library/tools/DESCRIPTION
> config.status: creating src/library/tools/Makefile
> config.status: creating src/library/tools/src/Makefile
> config.status: creating src/library/utils/DESCRIPTION
> config.status: creating src/library/utils/Makefile
> config.status: creating src/main/Makefile
> config.status: creating src/modules/Makefile
> config.status: creating src/modules/X11/Makefile
> config.status: creating src/modules/internet/Makefile
> config.status: creating src/modules/lapack/Makefile
> config.status: creating src/modules/vfonts/Makefile
> config.status: creating src/nmath/Makefile
> config.status: creating src/nmath/standalone/Makefile
> config.status: creating src/scripts/Makefile
> config.status: creating src/scripts/COMPILE
> config.status: creating src/scripts/INSTALL
> config.status: creating src/scripts/REMOVE
> config.status: creating src/scripts/R.sh
> config.status: creating src/scripts/Rdconv
> config.status: creating src/scripts/Rprof
> config.status: creating src/scripts/SHLIB
> config.status: creating src/scripts/Sd2Rd
> config.status: creating src/scripts/build
> config.status: creating src/scripts/check
> config.status: creating src/scripts/f77
> config.status: creating src/unix/Makefile
> config.status: creating tests/Makefile
> config.status: creating tests/Embedding/Makefile
> config.status: creating tests/Examples/Makefile
> config.status: creating tests/Native/Makefile
> config.status: creating tools/Makefile
> config.status: creating src/include/config.h
> config.status: src/include/config.h is unchanged
> config.status: executing default-1 commands
> config.status: creating po/POTFILES
> config.status: creating po/Makefile
> config.status: executing stamp-h commands
>
> R is now configured for powerpc-ibm-aix5.2.0.0
>
> Source directory: .
> Installation directory: /usr/local
>
> C compiler: gcc -mno-fp-in-toc -g -O2
> C++ compiler: g++ -g -O2
> Fortran compiler: f77 -g
>
> Interfaces supported: X11, tcltk
> External libraries: readline, BLAS(ESSL)
> Additional capabilities: PNG, JPEG, MBCS, NLS
> Options enabled: R profiling
>
> Recommended packages: yes
>
> configure: WARNING: you cannot build info or html versions of the R manuals
> configure: WARNING: I could not determine a browser
>
>
> ------------------------------------------------------------------------
>
> ______________________________________________
> R-devel at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
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