[Rd] Implementing R on IBM p690 cluster Jump
Ralf Seppelt
ralf.seppelt at ufz.de
Wed May 11 09:56:20 CEST 2005
Dear All,
we're trying to implement R on the IBM p690 cluster "Jump" at the
research centre in Jülich, Germany (c.f.
http://www.fz-juelich.de/nic/Supercomputer/computer-e.html)
using the most recent version of R (2.1.0) and precisly following the
installation instructions.
After ./configure we get the final message:
----------------
R is now configured for powerpc-ibm-aix5.2.0.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -mno-fp-in-toc -g -O2
C++ compiler: g++ -g -O2
Fortran compiler: f77 -g
Interfaces supported: X11, tcltk
External libraries: readline, BLAS(ESSL)
Additional capabilities: PNG, JPEG, MBCS, NLS
Options enabled: R profiling
Recommended packages: yes
configure: WARNING: you cannot build info or html versions of the R manuals
configure: WARNING: I could not determine a browser
--------------
After make we get
ufzaloe at j36.!:
ufzaloe at j36.!: make
...
gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall
-Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so dataentry.lo
devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11 -ljpeg -lpng -lz
ld: 0711-317 ERROR: Undefined symbol: .log10
ld: 0711-317 ERROR: Undefined symbol: .floor
ld: 0711-317 ERROR: Undefined symbol: .libintl_gettext
ld: 0711-317 ERROR: Undefined symbol: .pow
ld: 0711-317 ERROR: Undefined symbol: .sin
ld: 0711-317 ERROR: Undefined symbol: .cos
ld: 0711-317 ERROR: Undefined symbol: .tan
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
collect2: ld returned 8 exit status
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 2.
Stop.
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 1.
---------------
Before bugging the administiors in Jülich, we would like to ask the R
consortium: Are there any related experiences from people who worked on
the implementation of R on different platforms?
Thanks for help
Ralf Seppelt & Carsten Dormann
PS: the configure log-file is attached to this mail.
--
Dr. Ralf Seppelt
Professor at Martin-Luther Universität Halle-Wittenberg
Head of Dept. for Applied Landscape Ecology
Environmental Reasearch Centre (UFZ) Leipzig Halle
fon: +49 341 235 2021, fax: -2511, url: www.ufz.de
news: www.wiley-vch.de/publish/dt/books/ISBN3-527-30732-X/
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config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/COMPILE
config.status: creating src/scripts/INSTALL
config.status: creating src/scripts/REMOVE
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rdconv
config.status: creating src/scripts/Rprof
config.status: creating src/scripts/SHLIB
config.status: creating src/scripts/Sd2Rd
config.status: creating src/scripts/build
config.status: creating src/scripts/check
config.status: creating src/scripts/f77
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tests/Native/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands
R is now configured for powerpc-ibm-aix5.2.0.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -mno-fp-in-toc -g -O2
C++ compiler: g++ -g -O2
Fortran compiler: f77 -g
Interfaces supported: X11, tcltk
External libraries: readline, BLAS(ESSL)
Additional capabilities: PNG, JPEG, MBCS, NLS
Options enabled: R profiling
Recommended packages: yes
configure: WARNING: you cannot build info or html versions of the R manuals
configure: WARNING: I could not determine a browser
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