[Rd] make check reg-tests-3
Peter Dalgaard
p.dalgaard at biostat.ku.dk
Sun Nov 23 16:00:51 MET 2003
Peter Kleiweg <kleiweg at let.rug.nl> writes:
> Should I submit this as a bug report?
Maybe, but this is not happening on stock RedHat 8.0 and Debian
stable, so you need to be more specific about your setup. In
particular: Are you using nonstandard libraries or compiler options?
> --- reg-tests-3.Rout.save Thu Jul 3 09:55:40 2003
> +++ reg-tests-3.Rout Sun Nov 23 13:10:57 2003
> @@ -1,17 +1,18 @@
>
> -R : Copyright 2003, The R Development Core Team
> -Version 1.8.0 Under development (unstable) (2003-07-03)
> +R : Copyright 2003, The R Foundation for Statistical Computing
> +Version 1.8.1 (2003-11-21), ISBN 3-900051-00-3
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> -Type `license()' or `licence()' for distribution details.
> +Type 'license()' or 'licence()' for distribution details.
>
> R is a collaborative project with many contributors.
> -Type `contributors()' for more information.
> +Type 'contributors()' for more information and
> +'citation()' on how to cite R in publications.
>
> -Type `demo()' for some demos, `help()' for on-line help, or
> -`help.start()' for a HTML browser interface to help.
> -Type `q()' to quit R.
> +Type 'demo()' for some demos, 'help()' for on-line help, or
> +'help.start()' for a HTML browser interface to help.
> +Type 'q()' to quit R.
>
> > ### Regression tests for which the printed output is the issue
> > ### May fail, e.g. by needing Recommended packages
> @@ -137,7 +138,7 @@
> 54 0.0989545407 -1.357243e-05 -3.683573e-02 -0.028339562 -0.025145841
> 55 0.1644148644 -1.347342e-04 1.507463e-01 0.272775865 0.355144259
> 56 -1.0973102505 2.844224e-04 -2.939639e-01 -0.267067176 -0.586604116
> -57 NaN NaN NaN NaN NaN
> +57 0.0000000000 0.000000e+00 0.000000e+00 0.000000000 0.000000000
> 58 1.1181936467 -1.814925e-04 1.820092e-01 0.230407448 0.281788680
> 59 -0.1289781075 2.595372e-05 -3.776833e-02 -0.058580136 -0.126069473
> 60 0.4827651281 -1.458463e-04 9.396412e-02 -0.005593267 0.099263965
> @@ -231,7 +232,7 @@
> 54 -0.0150792891 -0.0425585103 6.777594e-03 0.0030583353 -0.0591176911
> 55 0.4668348880 -0.0212547234 4.732189e-01 0.4185931034 0.2944838529
> 56 -0.7432312183 -0.2735589895 -6.870778e-02 -0.0393632338 0.1816128390
> -57 NaN NaN NaN NaN NaN
> +57 0.0000000000 0.0000000000 0.000000e+00 0.0000000000 0.0000000000
> 58 0.1945880055 -0.5587521455 -2.266734e-01 -0.3613221042 -0.5509923750
> 59 -0.0900361434 0.0807855154 -8.877433e-04 -0.0437027380 0.0203231292
> 60 0.2757970992 -0.3494459094 2.397384e-01 0.1279587545 -0.1512732820
> @@ -325,7 +326,7 @@
> 54 -0.0052948316 0.0043390590 -0.0062558306 -0.0100922249 -0.0036764450
> 55 0.3245941919 0.4533108376 -0.1196342985 -0.0946588832 0.0778256270
> 56 0.1438282891 -0.5411631576 0.0968253310 0.3927869929 0.2777652749
> -57 NaN NaN NaN NaN NaN
> +57 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
> 58 -0.5770947483 -0.1184054962 -0.1740228604 -0.0285545091 0.7693037902
> 59 0.0412280879 -0.0075198458 0.0438882586 0.0121450418 -0.1252262379
> 60 0.3533541160 0.2760694598 -0.1036620689 0.1001975219 0.0703124944
> @@ -379,7 +380,7 @@
> 49 50 51 52 53 54 55 56
> 3.588734 3.589710 3.583459 3.581755 3.599157 3.599895 3.528075 3.559578
> 57 58 59 60 61 62 63 64
> - NaN 3.523963 3.598459 3.571771 3.582319 3.600406 3.596626 3.592960
> +3.601231 3.523963 3.598459 3.571771 3.582319 3.600406 3.596626 3.592960
> 65 66 67 68 69 70 71 72
> 3.583325 3.600828 3.569987 3.592482 3.599979 3.580547 3.600799 3.599768
> 73 74 75 76 77 78 79 80
> @@ -432,44 +433,57 @@
> Potentially influential observations of
> lm(formula = 1000/MPG.city ~ Weight + Cylinders + Type + EngineSize + DriveTrain, data = Cars93) :
>
> - dfb.1_ dfb.Wght dfb.Cyl4 dfb.Cyl5 dfb.Cyl6 dfb.Cyl8 dfb.Cyln dfb.TypL
> -8 -0.16 0.00 -0.10 -0.07 -0.24 -0.44 0.01 0.12
> -19 -0.03 0.09 -0.01 -0.03 0.00 -0.01 -0.03 0.08
> -28 0.11 -0.15 0.04 0.02 0.02 0.02 0.04 0.07
> -39 -0.19 0.05 0.34 0.21 0.25 0.18 0.18 -0.01
> -42 0.12 -0.04 -0.30 -0.17 -0.28 -0.26 -0.11 -0.03
> -57 NaN NaN NaN NaN NaN NaN NaN NaN
> -66 -0.03 0.04 -0.02 -0.03 -0.01 0.00 -0.02 -0.01
> -80 0.18 0.00 -0.31 -0.17 -0.24 -0.19 -0.15 0.00
> -83 0.01 0.01 -0.04 -0.03 -0.04 -0.03 -0.02 0.00
> -87 -0.03 0.04 -0.01 -0.04 -0.04 -0.03 -0.02 0.04
> -89 -0.11 0.11 -0.05 0.28 -0.06 -0.04 -0.06 -0.01
> -93 -0.11 0.11 -0.05 -0.45 -0.06 -0.04 -0.06 -0.01
> - dfb.TypM dfb.TypSm dfb.TypSp dfb.TypV dfb.EngS dfb.DrTF dfb.DrTR dffit
> -8 0.00 0.21 0.06 -0.04 0.47 -0.04 0.03 0.73
> -19 0.01 0.00 -0.04 -0.01 -0.15 0.01 0.02 -0.24
> -28 0.08 -0.08 -0.09 0.16 0.06 0.09 0.12 -0.26
> -39 -0.01 0.04 0.01 -0.06 0.01 -0.08 -0.08 -0.44
> -42 0.01 -0.42 0.01 -0.03 0.18 -0.10 -0.11 -0.89
> -57 NaN NaN NaN NaN NaN NaN NaN NaN
> -66 -0.02 0.01 0.01 0.02 -0.03 0.05 0.03 0.08
> -80 0.01 0.01 -0.02 -0.07 0.01 -0.18 -0.14 0.45
> -83 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.05
> -87 0.03 0.02 0.03 0.06 -0.02 -0.03 -0.02 0.14
> -89 -0.07 0.05 0.04 0.08 -0.06 0.12 0.10 0.64
> -93 -0.07 0.05 0.04 0.08 -0.06 0.12 0.10 -0.64
> - cov.r cook.d hat
> -8 1.71_* 0.04 0.39
> -19 2.09_* 0.00 0.43
> -28 1.86_* 0.00 0.36
> -39 1.76_* 0.01 0.36
> -42 0.13_* 0.05 0.06
> -57 NaN Inf_* 1.00_*
> -66 1.63_* 0.00 0.26
> -80 1.92_* 0.01 0.40
> -83 1.88_* 0.00 0.36
> -87 1.60_* 0.00 0.25
> -89 2.68_* 0.03 0.57_*
> -93 2.68_* 0.03 0.57_*
> + dfb.1_ dfb.Wght dfb.Cyl4 dfb.Cyl5 dfb.Cyl6
> +8 -1.60000e-01 0.00000e+00 -1.00000e-01 -7.00000e-02 -2.40000e-01
> +19 -3.00000e-02 9.00000e-02 -1.00000e-02 -3.00000e-02 0.00000e+00
> +28 1.10000e-01 -1.50000e-01 4.00000e-02 2.00000e-02 2.00000e-02
> +39 -1.90000e-01 5.00000e-02 3.40000e-01 2.10000e-01 2.50000e-01
> +42 1.20000e-01 -4.00000e-02 -3.00000e-01 -1.70000e-01 -2.80000e-01
> +57 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00
> +66 -3.00000e-02 4.00000e-02 -2.00000e-02 -3.00000e-02 -1.00000e-02
> +80 1.80000e-01 0.00000e+00 -3.10000e-01 -1.70000e-01 -2.40000e-01
> +83 1.00000e-02 1.00000e-02 -4.00000e-02 -3.00000e-02 -4.00000e-02
> +87 -3.00000e-02 4.00000e-02 -1.00000e-02 -4.00000e-02 -4.00000e-02
> +89 -1.10000e-01 1.10000e-01 -5.00000e-02 2.80000e-01 -6.00000e-02
> +93 -1.10000e-01 1.10000e-01 -5.00000e-02 -4.50000e-01 -6.00000e-02
> + dfb.Cyl8 dfb.Cyln dfb.TypL dfb.TypM dfb.TypSm
> +8 -4.40000e-01 1.00000e-02 1.20000e-01 0.00000e+00 2.10000e-01
> +19 -1.00000e-02 -3.00000e-02 8.00000e-02 1.00000e-02 0.00000e+00
> +28 2.00000e-02 4.00000e-02 7.00000e-02 8.00000e-02 -8.00000e-02
> +39 1.80000e-01 1.80000e-01 -1.00000e-02 -1.00000e-02 4.00000e-02
> +42 -2.60000e-01 -1.10000e-01 -3.00000e-02 1.00000e-02 -4.20000e-01
> +57 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00
> +66 0.00000e+00 -2.00000e-02 -1.00000e-02 -2.00000e-02 1.00000e-02
> +80 -1.90000e-01 -1.50000e-01 0.00000e+00 1.00000e-02 1.00000e-02
> +83 -3.00000e-02 -2.00000e-02 0.00000e+00 0.00000e+00 0.00000e+00
> +87 -3.00000e-02 -2.00000e-02 4.00000e-02 3.00000e-02 2.00000e-02
> +89 -4.00000e-02 -6.00000e-02 -1.00000e-02 -7.00000e-02 5.00000e-02
> +93 -4.00000e-02 -6.00000e-02 -1.00000e-02 -7.00000e-02 5.00000e-02
> + dfb.TypSp dfb.TypV dfb.EngS dfb.DrTF dfb.DrTR
> +8 6.00000e-02 -4.00000e-02 4.70000e-01 -4.00000e-02 3.00000e-02
> +19 -4.00000e-02 -1.00000e-02 -1.50000e-01 1.00000e-02 2.00000e-02
> +28 -9.00000e-02 1.60000e-01 6.00000e-02 9.00000e-02 1.20000e-01
> +39 1.00000e-02 -6.00000e-02 1.00000e-02 -8.00000e-02 -8.00000e-02
> +42 1.00000e-02 -3.00000e-02 1.80000e-01 -1.00000e-01 -1.10000e-01
> +57 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00 0.00000e+00
> +66 1.00000e-02 2.00000e-02 -3.00000e-02 5.00000e-02 3.00000e-02
> +80 -2.00000e-02 -7.00000e-02 1.00000e-02 -1.80000e-01 -1.40000e-01
> +83 0.00000e+00 0.00000e+00 0.00000e+00 1.00000e-02 1.00000e-02
> +87 3.00000e-02 6.00000e-02 -2.00000e-02 -3.00000e-02 -2.00000e-02
> +89 4.00000e-02 8.00000e-02 -6.00000e-02 1.20000e-01 1.00000e-01
> +93 4.00000e-02 8.00000e-02 -6.00000e-02 1.20000e-01 1.00000e-01
> + dffit cov.r cook.d hat
> +8 7.30000e-01 1.71000e+00_* 4.00000e-02 3.90000e-01
> +19 -2.40000e-01 2.09000e+00_* 0.00000e+00 4.30000e-01
> +28 -2.60000e-01 1.86000e+00_* 0.00000e+00 3.60000e-01
> +39 -4.40000e-01 1.76000e+00_* 1.00000e-02 3.60000e-01
> +42 -8.90000e-01 1.30000e-01_* 5.00000e-02 6.00000e-02
> +57 4.00000e-02 1.09307e+16_* 0.00000e+00 1.00000e+00_*
> +66 8.00000e-02 1.63000e+00_* 0.00000e+00 2.60000e-01
> +80 4.50000e-01 1.92000e+00_* 1.00000e-02 4.00000e-01
> +83 5.00000e-02 1.88000e+00_* 0.00000e+00 3.60000e-01
> +87 1.40000e-01 1.60000e+00_* 0.00000e+00 2.50000e-01
> +89 6.40000e-01 2.68000e+00_* 3.00000e-02 5.70000e-01_*
> +93 -6.40000e-01 2.68000e+00_* 3.00000e-02 5.70000e-01_*
> > ## only last two cols in row 57 should be influential
> >
>
> Version:
> platform = i686-pc-linux-gnu
> arch = i686
> os = linux-gnu
> system = i686, linux-gnu
> status =
> major = 1
> minor = 8.1
> year = 2003
> month = 11
> day = 21
> language = R
>
> Search Path:
> .GlobalEnv, package:methods, package:ctest, package:mva, package:modreg, package:nls, package:ts, Autoloads, package:base
>
> ______________________________________________
> R-devel at stat.math.ethz.ch mailing list
> https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
>
--
O__ ---- Peter Dalgaard Blegdamsvej 3
c/ /'_ --- Dept. of Biostatistics 2200 Cph. N
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
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