[ESS-bugs] ess-mode 5.3.0; C-c C-o does not properly delete output after C-c C-c on long output

[Sebastian Luque]

Whenever long output is interrupted with C-c C-c
(comint-interrupt-subjob), attempting to clear the output does not delete
all the output, and inserts the "output flushed" string at the end of the
line:

---<---------------cut here---------------start-------------->---

R> rnorm(10000)
[... long output ...]
 [6307] -0.3053762  0.6730085 -0.71275  C-c C-c25 -0.2003948  0.8233224  0.1711614
[... output continues after hitting C-c C-c...]
R> 
---<---------------cut here---------------end---------------->---

Hitting C-c C-o at this point results in this:

---<---------------cut here---------------start-------------->---

R> rnorm(10000)
[... long output ...]
 [6307] -0.3053762  0.6730085 -0.71275*** output flushed ***
R> 
---<---------------cut here---------------end---------------->---
 




Emacs  : GNU Emacs 22.0.50.1 (i486-pc-linux-gnu, X toolkit)
 of 2006-04-20 on pacem, modified by Debian
Package: ess-mode 5.3.0

current state:
==============
(setq
 ess-language "S"
 ess-dialect "R"
 ess-ask-for-ess-directory t
 ess-ask-about-transfile nil
 ess-directory nil
 ess-keep-dump-files "always"
 ess-source-directory "~/scripts/R"
 )

[ess-site.el]: ess-customize-alist=nil 
[ess-site.el _2_]: ess-customize-alist=nil 
(S): ess-s-versions-create making M-x defuns for (R): ess-r-versions-create making M-x defuns for (ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=vCalibration.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave, envir=baseenv())
) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value", envir=baseenv()))
) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.

(R): ess-dialect=R, buf=vCalibration.R, start-arg=nil
 current-prefix-arg=nil
(inferior-ess 0): ess-start-args=--no-readline   
ess-setq-vars-default 0: ess-language=Initial, -dialect=nil, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
ess-setq-vars-default 1: ess-language=S, -dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 1): lang=S, dialect=R, tmp-dialect=R, buf=vCalibration.R
(inf-ess 1.1): procname=R temp-dialect=R, buf-name=*R* 
(inferior-ess) Method #3 start=/home/sluque/Documents/PhDThesis/Diving-Movements/TDR-files/Adult-females/work-dir/ buf=*R*
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(inf-ess 2.1): ess-language=S, ess-dialect=R buf=*R* 
(inf-ess 2.2): start args = --no-readline  , inf-ess-start-args=--no-readline   
(inf-ess finish [S(R), R(nil,nil)]
(ess-multi 0):  inf-ess-start-args=--no-readline  , comint-..echoes=nil
(i-ess 1): buf=*R*, lang=S, comint..echo=nil, comint..sender=comint-simple-send,
(i-ess 2): buf=*R*, lang=S, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=t, comint..sender=inferior-R-input-sender
(i-ess 3): curr-buf=*R*, comint..echo=t, comint..sender=inferior-R-input-sender,
(ess-multi post inf-ess: start-args=--no-readline  , comint-echoes=t
(ess-multi 1):  start-args=--no-readline   
Making Process...Buf *R*, Proc R, Prog R
 Start File=nil, Args= --no-readline  .
(R): inferior-ess-language-start=options(STERM='iESS', editor='emacsclient')
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=velCalib.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave, envir=baseenv())
) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value", envir=baseenv()))
) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(get-object-list R) ..--> (ess-get-modtime-list)
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-object-names obj=package:tcltk): no directory - trying names
(ess-object-names obj=package:diveMove): no directory - trying names
(ess-object-names obj=package:chron): no directory - trying names
(ess-object-names obj=package:gmodels): no directory - trying names
(ess-object-names obj=package:lattice): no directory - trying names
(ess-object-names obj=package:methods): no directory - trying names
(ess-object-names obj=package:stats): no directory - trying names
(ess-object-names obj=package:graphics): no directory - trying names
(ess-object-names obj=package:grDevices): no directory - trying names
(ess-object-names obj=package:utils): no directory - trying names
(ess-object-names obj=package:datasets): no directory - trying names
(ess-object-names obj=Autoloads): no directory - trying names
(ess-object-names obj=package:base): no directory - trying names
ess-get-modtime-list: new alist of length 14
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-object-names obj=package:tcltk): no directory - trying names
(ess-object-names obj=package:diveMove): no directory - trying names
(ess-object-names obj=package:chron): no directory - trying names
(ess-object-names obj=package:gmodels): no directory - trying names
(ess-object-names obj=package:lattice): no directory - trying names
(ess-object-names obj=package:methods): no directory - trying names
(ess-object-names obj=package:stats): no directory - trying names
(ess-object-names obj=package:graphics): no directory - trying names
(ess-object-names obj=package:grDevices): no directory - trying names
(ess-object-names obj=package:utils): no directory - trying names
(ess-object-names obj=package:datasets): no directory - trying names
(ess-object-names obj=Autoloads): no directory - trying names
(ess-object-names obj=package:base): no directory - trying names
ess-get-modtime-list: new alist of length 14
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-help: error-buffer '*help[R](TDRcalibrate)*' nodocs (1 17)
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=calibrate.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave, envir=baseenv())
) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value", envir=baseenv()))
) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=velCalib.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave, envir=baseenv())
) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value", envir=baseenv()))
) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-mode-1): ess-language=S, ess-dialect=R buf=velCalib.R 
(ess-mode-1.5): alist=((ess-local-customize-alist quote R-customize-alist) (ess-dialect . R) (ess-suffix . R) (ess-dump-filename-template ess-replace-regexp-in-string S$ ess-suffix ess-dump-filename-template-proto) (ess-mode-syntax-table . R-syntax-table) (ess-mode-editing-alist . R-editing-alist) (ess-change-sp-regexp . ess-R-change-sp-regexp) (ess-help-sec-regex . ess-help-R-sec-regex) (ess-help-sec-keys-alist . ess-help-R-sec-keys-alist) (ess-loop-timeout . ess-S-loop-timeout) (ess-cmd-delay . ess-R-cmd-delay) (ess-function-pattern . ess-R-function-pattern) (ess-object-name-db-file . ess-r-namedb.el) (ess-retr-lastvalue-command . assign(".Last.value", .ess.lvsave, envir=baseenv())
) (ess-save-lastvalue-command . assign(".ess.lvsave", get(".Last.value", envir=baseenv()))
) (ess-imenu-mode-function quote ess-imenu-R) (inferior-ess-program . inferior-R-program-name) (inferior-ess-objects-command . inferior-R-objects-command) (inferior-ess-font-lock-keywords . inferior-ess-R-font-lock-keywords) (inferior-ess-search-list-command . search()
) (inferior-ess-help-command . help("%s", htmlhelp=FALSE)
) (inferior-ess-help-filetype) (inferior-ess-exit-command . q()) (inferior-ess-exit-prompt . Save workspace image? [y/n/c]: ) (inferior-ess-primary-prompt . \([A-Z][][A-Za-z0-9.]*\)*> ) (inferior-ess-secondary-prompt . + ?) (inferior-ess-start-file) (inferior-ess-start-args . ) (ess-STERM . iESS) (ess-editor . R-editor) (ess-pager . R-pager) (ess-language . S) (inferior-ess-exit-command . q()
) (inferior-ess-language-start eval inferior-S-language-start) (comint-use-prompt-regexp-instead-of-fields . t)) 
(ess-mode-1.6): editing-alist=((paragraph-start concat \s-*$\| page-delimiter) (paragraph-separate concat \s-*$\| page-delimiter) (paragraph-ignore-fill-prefix . t) (require-final-newline . t) (comment-start . #) (comment-add . 1) (comment-start-skip . #+ *) (comment-column . 40) (indent-line-function quote S-indent-line) (parse-sexp-ignore-comments . t) (ess-set-style . ess-default-style) (ess-local-process-name) (ess-mode-syntax-table . S-syntax-table) (add-log-current-defun-header-regexp . ^\(.+\)\s-+<-[ 	
]*function) (font-lock-defaults quote (ess-R-mode-font-lock-keywords nil nil ((46 . w) (95 . w))))) 
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send

Finished setting up ESS-mode.
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names
(ess-setq-vars-LOCAL): language=S, dialect=R, buf=nil, comint..echoes=nil, comint..sender=comint-simple-send
(ess-help: error-buffer '*help[R](z)*' nodocs (1 17)
(get-object-list R) .. using existing ess-*-alist
(ess-object-names obj=.GlobalEnv): no directory - trying names