[BioC] Package qvalue - can it be installed without TCL-TK support?

[Peter Langfelder]

Another solution is to find an old version of qvalue, e.g., here:

http://cran.r-project.org/src/contrib/Archive/qvalue/

The version 1.1.1 is, to the best of my knowledge, the last that did
not use the graphical interface and the Tcl/Tk that comes with it.

Peter


On Fri, May 23, 2014 at 8:51 AM, Giuseppe Gallone
<giuseppe.gallone at dpag.ox.ac.uk> wrote:
> John
>
> thanks, I will try what you suggested.
>
> Best wishes
> Giuseppe
>
>
> On 05/23/14 15:31, John Blischak wrote:
>>
>> A short-term solution would be to download the source code and just
>> directly use the qvalue function.
>>
>>   wget
>>
>> http://bioconductor.org/packages/release/bioc/src/contrib/qvalue_1.38.0.tar.gz
>>   tar xzf qvalue_1.38.0.tar.gz
>>
>> Then source the code in R:
>> source("qvalue/R/qvalue.R")
>>
>> If you wanted to install, you could edit the source code. I'd imagine
>> deleting the function qvalue.gui and removing the references to tcltk in
>> the package DESCRIPTION and NAMESPACE would allow you to install it from
>> source.
>>
>> John
>>
>>
>> On Fri, May 23, 2014 at 7:44 AM, Giuseppe Gallone
>> <giuseppe.gallone at dpag.ox.ac.uk <mailto:giuseppe.gallone at dpag.ox.ac.uk>>
>>
>> wrote:
>>
>>     Hi
>>
>>     I need the qvalue package however I don't need the TCL-TK interface.
>>
>>     My R installation was compiled without native TCL-TK support and it
>>     is inconvenient for me atm to reinstall/replace etc to add support.
>>
>>     As a consequence, as it stands it seems I cannot get qvalue to work
>>     on my system.
>>
>>     Does anybody know of a way to install and run qvalue excluding the
>>     TCL-TK bindings?
>>
>>     Best regards
>>     Giuseppe
>>
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