[BioC] Can\'t load new BioC packages
Lapointe, David
David.Lapointe at tufts.edu
Tue Apr 15 16:38:46 CEST 2014
Yes that worked perfectly.
Thanks
David
--
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research and Geospatial Technology Services
Tufts Technology Services (TTS)
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Somerville MA 02144
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On 4/15/14, 10:29 AM, "Dan Tenenbaum" <dtenenba at fhcrc.org> wrote:
>Hi David,
>
>You need to use the Snow Leopard version of R instead of the Mavericks
>version, see
>
>https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html
>
>for more information.
>
>Dan
>
>
>----- Original Message -----
>> From: "David Lapointe [guest]" <guest at bioconductor.org>
>> To: bioconductor at r-project.org, "david lapointe"
>><david.lapointe at tufts.edu>
>> Sent: Tuesday, April 15, 2014 7:16:16 AM
>> Subject: [BioC] Can\'t load new BioC packages
>>
>>
>> The new packages don't seem to be available. This is a confusing
>> message since I do have an internet connection and bioconductor,org
>> is available and up.
>>
>> David
>> > source("http://bioconductor.org/biocLite.R")
>> Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
>> > biocLite()
>> Error: 'no packages in repository (no internet connection?)' while
>> trying
>> http://bioconductor.org/packages/2.14/bioc
>>
>>
>> -- output of sessionInfo():
>>
>> > sessionInfo()
>> R version 3.1.0 (2014-04-10)
>> Platform: x86_64-apple-darwin13.1.0 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats graphics grDevices utils datasets methods
>> [7] base
>>
>> other attached packages:
>> [1] BiocInstaller_1.14.1
>>
>> loaded via a namespace (and not attached):
>> [1] tools_3.1.0
>>
>> --
>> Sent via the guest posting facility at bioconductor.org.
>>
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