[BioC] Can\'t load new BioC packages

Lapointe, David David.Lapointe at tufts.edu
Tue Apr 15 16:38:46 CEST 2014


Yes that worked perfectly.

Thanks

David 
-- 
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research and Geospatial Technology Services
Tufts Technology Services (TTS)
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Somerville MA 02144

Phone:  617-627-5319
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On 4/15/14, 10:29 AM, "Dan Tenenbaum" <dtenenba at fhcrc.org> wrote:

>Hi David,
>
>You need to use the Snow Leopard version of R instead of the Mavericks
>version, see
>
>https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html
>
>for more information.
>
>Dan
>
>
>----- Original Message -----
>> From: "David Lapointe [guest]" <guest at bioconductor.org>
>> To: bioconductor at r-project.org, "david lapointe"
>><david.lapointe at tufts.edu>
>> Sent: Tuesday, April 15, 2014 7:16:16 AM
>> Subject: [BioC] Can\'t load new BioC packages
>> 
>> 
>> The new packages don't seem to be available.  This is a confusing
>> message since I do have an internet connection and bioconductor,org
>> is available and up.
>> 
>> David
>> > source("http://bioconductor.org/biocLite.R")
>> Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
>> > biocLite()
>> Error: 'no packages in repository (no internet connection?)' while
>> trying
>>   http://bioconductor.org/packages/2.14/bioc
>> 
>> 
>>  -- output of sessionInfo():
>> 
>> > sessionInfo()
>> R version 3.1.0 (2014-04-10)
>> Platform: x86_64-apple-darwin13.1.0 (64-bit)
>> 
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> 
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods
>> [7] base
>> 
>> other attached packages:
>> [1] BiocInstaller_1.14.1
>> 
>> loaded via a namespace (and not attached):
>> [1] tools_3.1.0
>> 
>> --
>> Sent via the guest posting facility at bioconductor.org.
>> 
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