[BioC] Can\'t load new BioC packages

Dan Tenenbaum dtenenba at fhcrc.org
Tue Apr 15 16:29:01 CEST 2014


Hi David,

You need to use the Snow Leopard version of R instead of the Mavericks version, see

https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html

for more information.

Dan


----- Original Message -----
> From: "David Lapointe [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, "david lapointe" <david.lapointe at tufts.edu>
> Sent: Tuesday, April 15, 2014 7:16:16 AM
> Subject: [BioC] Can\'t load new BioC packages
> 
> 
> The new packages don't seem to be available.  This is a confusing
> message since I do have an internet connection and bioconductor,org
> is available and up.
> 
> David
> > source("http://bioconductor.org/biocLite.R")
> Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help
> > biocLite()
> Error: 'no packages in repository (no internet connection?)' while
> trying
>   http://bioconductor.org/packages/2.14/bioc
> 
> 
>  -- output of sessionInfo():
> 
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-apple-darwin13.1.0 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods
> [7] base
> 
> other attached packages:
> [1] BiocInstaller_1.14.1
> 
> loaded via a namespace (and not attached):
> [1] tools_3.1.0
> 
> --
> Sent via the guest posting facility at bioconductor.org.
> 
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