[BioC] GSVA questions

[Dan Tenenbaum]

CC'ing GSVA maintainer.

On Thu, Sep 5, 2013 at 5:45 PM, Joe [guest] <guest at bioconductor.org> wrote:
>
>  I'm a GSVA package new user. One question make me confused. If I used custom CDF (download from BrainArray website), usually, the custom CDF file has unique ProbeID correspond to one gene, so this format expression data could be used in GSVA?
> Another one, exclude c2BroadSet, is there any GeneSellection data could be used or download?
>
>  -- output of sessionInfo():
>
> R version 3.0.1 (2013-05-16)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
> [2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
> [3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
> [4] LC_NUMERIC=C
> [5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
>
> attached base packages:
> [1] parallel  stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
>  [1] genefilter_1.42.0              primeviewhsentrezgprobe_17.1.0
>  [3] primeviewhsentrezg.db_17.1.0   org.Hs.eg.db_2.9.0
>  [5] RSQLite_0.11.4                 DBI_0.2-7
>  [7] primeviewhsentrezgcdf_17.1.0   AnnotationDbi_1.22.6
>  [9] Biobase_2.20.1                 BiocGenerics_0.6.0
> [11] rj_1.1.3-1
>
> loaded via a namespace (and not attached):
> [1] annotate_1.38.0 IRanges_1.18.3  rj.gd_1.1.3-1   splines_3.0.1
> [5] stats4_3.0.1    survival_2.37-4 tools_3.0.1     XML_3.98-1.1
> [9] xtable_1.7-1
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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