[BioC] GSVA questions
Joe [guest]
guest at bioconductor.org
Fri Sep 6 02:45:41 CEST 2013
I'm a GSVA package new user. One question make me confused. If I used custom CDF (download from BrainArray website), usually, the custom CDF file has unique ProbeID correspond to one gene, so this format expression data could be used in GSVA?
Another one, exclude c2BroadSet, is there any GeneSellection data could be used or download?
-- output of sessionInfo():
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] genefilter_1.42.0 primeviewhsentrezgprobe_17.1.0
[3] primeviewhsentrezg.db_17.1.0 org.Hs.eg.db_2.9.0
[5] RSQLite_0.11.4 DBI_0.2-7
[7] primeviewhsentrezgcdf_17.1.0 AnnotationDbi_1.22.6
[9] Biobase_2.20.1 BiocGenerics_0.6.0
[11] rj_1.1.3-1
loaded via a namespace (and not attached):
[1] annotate_1.38.0 IRanges_1.18.3 rj.gd_1.1.3-1 splines_3.0.1
[5] stats4_3.0.1 survival_2.37-4 tools_3.0.1 XML_3.98-1.1
[9] xtable_1.7-1
--
Sent via the guest posting facility at bioconductor.org.
More information about the Bioconductor
mailing list