[BioC] FRiP for ChIP-seq in Bioconductor?
giuseppe.gallone at dpag.ox.ac.uk
Tue Nov 5 16:31:10 CET 2013
the SPOT quality metric, used for the ENCODE publications, probably
allows you to obtain something very similar to the FRiP.
On 05/11/2013 14:19, Sidders, Benjamin wrote:
> Hi All,
> It has been recommended for ChIP-seq experiments that the fraction of reads in peaks (FRiP) stat is a good QC measure [http://genome.cshlp.org/content/22/9/1813.full]. I can't seem to find a BioConductor package in which this is implemented – has anyone got any suggestions (other than rolling my own!)?
> Dr Ben Sidders
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