[BioC] FRiP for ChIP-seq in Bioconductor?

Sidders, Benjamin Benjamin.Sidders at pfizer.com
Tue Nov 5 15:19:55 CET 2013

Hi All,

It has been recommended for ChIP-seq experiments that the fraction of reads in peaks (FRiP) stat is a good QC measure [http://genome.cshlp.org/content/22/9/1813.full].  I can't seem to find a BioConductor package in which this is implemented – has anyone got any suggestions (other than rolling my own!)?

Dr Ben Sidders

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