[BioC] Error to install a package for Affymetrix data‏

[chm chag]

Dear Sir;

I reinstalled the latest version of R (R-3.0.1) as bioconductor but it still does not work: By installing the  oligo package I always have this error message (Warning: unable to move temporary installation "C: \ Program Files \ R \ R-3.0.1 \ library \ file5bc5cca72b1 \ trace 'to' C: \ Program Files \ R \ R-3.0.1 \ library \ trace ')
 and when running the command: library (oligo) I have this error message, in addition to this dialog window (see picture attached).

thank you for your help.

 

Cordially;
Madiha Chagdal;



 

> Date: Mon, 24 Jun 2013 09:59:32 -0400
> From: jmacdon at uw.edu
> To: chagdal-madiha at hotmail.com
> CC: bioconductor at r-project.org
> Subject: Re: [BioC] Error to install a package for Affymetrix data‏
> 
> You need to first upgrade to the current version of R and re-install 
> Bioconductor.
> 
> Best,
> 
> Jim
> 
> 
> 
> On 6/21/2013 9:23 AM, chm chag wrote:
> > Dear Sir,
> >
> > The instalation of the 'oligo' package does not work and I have these error messages:
> >
> >> source("http://bioconductor.org/biocLite.R")
> >> biocLite("oligo")
> > BioC_mirror: http://bioconductor.org
> > Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version
> > 2.15.
> > Installing package(s) 'oligo'
> > Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
> > essai de l'URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/contrib/2.15/oligo_1.22.0.zip'
> > Content type 'application/zip' length 5765066 bytes (5.5 Mb)
> > URL ouverte
> > downloaded 5.5 Mb
> > package ‘oligo’ successfully unpacked and MD5 sums checked
> > The downloaded binary packages are in
> > C:\Documents and Settings\Administrateur\Local Settings\Temp\Rtmp4CqL4q\downloaded_packages
> > Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
> >
> >
> > And when I compile the command:> library(oligo) I have this:
> >
> >
> > Error in inDL(x, as.logical(local), as.logical(now), ...) :
> > impossible de charger l'objet partagé 'C:/Program Files/R/R-2.15.3/library/affxparser/libs/i386/affxparser.dll':
> > LoadLibrary failure: La procédure spécifiée est introuvable.
> > Erreur : le chargement du package / espace de noms a échoué pour ‘oligo’
> >
> > And even by compiling this commands for instaling "hugene21sttranscriptcluster.db" package I have this error message:
> >> source("http://bioconductor.org/biocLite.R")
> >> biocLite("hugene21sttranscriptcluster.db", type="source")
> >
> > BioC_mirror: http://bioconductor.org
> > Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
> > Installing package(s) 'hugene21sttranscriptcluster.db'
> > Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
> > Message d'avis :
> > package ‘hugene21sttranscriptcluster.db’ is not available (for R version 2.15.3)
> >
> > cordially;
> >
> >
> > Madiha Chagdal
> > SITN Master-2 : Statistics, Computer and Digital Techniques
> > Claude Bernard Lyon-1 University
> >
> > 
> > [[alternative HTML version deleted]]
> >
> >
> >
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> 
> -- 
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>