[BioC] Error to install a package for Affymetrix data‏

[James W. MacDonald]

You need to first upgrade to the current version of R and re-install 
Bioconductor.

Best,

Jim



On 6/21/2013 9:23 AM, chm chag wrote:
> Dear Sir,
>
> The instalation of the 'oligo' package does not work and I have these error messages:
>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("oligo")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version
>    2.15.
> Installing package(s) 'oligo'
> Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
> essai de l'URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/contrib/2.15/oligo_1.22.0.zip'
> Content type 'application/zip' length 5765066 bytes (5.5 Mb)
> URL ouverte
> downloaded 5.5 Mb
> package ‘oligo’ successfully unpacked and MD5 sums checked
> The downloaded binary packages are in
>          C:\Documents and Settings\Administrateur\Local Settings\Temp\Rtmp4CqL4q\downloaded_packages
> Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
>
>
> And when I compile the command:>  library(oligo) I have this:
>
>
> Error in inDL(x, as.logical(local), as.logical(now), ...) :
>    impossible de charger l'objet partagé 'C:/Program Files/R/R-2.15.3/library/affxparser/libs/i386/affxparser.dll':
>    LoadLibrary failure:  La procédure spécifiée est introuvable.
> Erreur : le chargement du package / espace de noms a échoué pour ‘oligo’
>
> And even by compiling this commands for instaling "hugene21sttranscriptcluster.db" package I have this error message:
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("hugene21sttranscriptcluster.db", type="source")
>
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
> Installing package(s) 'hugene21sttranscriptcluster.db'
> Avis : unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15
> Message d'avis :
> package ‘hugene21sttranscriptcluster.db’ is not available (for R version 2.15.3)
>
> cordially;
>
>
> Madiha Chagdal
> SITN Master-2 : Statistics, Computer and Digital Techniques
> Claude Bernard Lyon-1 University
>
>   		 	   		
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>
>
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099