[BioC] org.Hs.eg.db package loading issues

[Jia, Li (NIH/NCI) [C]]

Thanks Ekta! I just got message from Dan who suggested to update to 3.0.1, which works.
Have a nice weekend!
Li

From: Ekta Jain <ekta.jain at teri.res.in<mailto:ekta.jain at teri.res.in>>
Date: Fri, 26 Jul 2013 21:16:48 +0530
To: "Guest [guest]" <guest at bioconductor.org<mailto:guest at bioconductor.org>>
Cc: <bioconductor at r-project.org<mailto:bioconductor at r-project.org>>, Mac User <jial2 at mail.nih.gov<mailto:jial2 at mail.nih.gov>>
Subject: Re: [BioC] org.Hs.eg.db package loading issues

Hi,
I got some error too when I was trying to load the org.Hs.eg.db in R. I downloaded the .zip file of the package and then installed it manually as a local package, it worked for me.

Hope it works for you as well.
Regards

Ekta Jain
Research Analyst
Biotechnology and Bio-resources Division
The Energy and Resources Institute, India Habitat Centre
Lodhi Road, New Delhi - 110033
#09958818853
ekta.jain at teri.res.in<mailto:ekta.jain at teri.res.in>


-----bioconductor-bounces at r-project.org<mailto:-----bioconductor-bounces at r-project.org> wrote: -----
To: bioconductor at r-project.org<mailto:bioconductor at r-project.org>, jial2 at mail.nih.gov<mailto:jial2 at mail.nih.gov>
From: "Guest [guest]"
Sent by: bioconductor-bounces at r-project.org<mailto:bioconductor-bounces at r-project.org>
Date: 07/26/2013 09:13PM
Subject: [BioC] org.Hs.eg.db package loading issues

Hi,

When I run the R code on analysis of HuGene2.0ST array, it generated an error as follows:

> source("/Users/jial2/Documents/projects/Project422/limmaAnalysis.R")
Loading required package: org.Hs.eg.db
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: get(name, envir = asNamespace(pkg), inherits = FALSE)
  error: object '.setDummyField' not found
Error: package â■˜org.Hs.eg.dbâ■™ could not be loaded

Then I run the library individually, it still has the same error message.

> library(org.Hs.eg.db)
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
  call: get(name, envir = asNamespace(pkg), inherits = FALSE)
  error: object '.setDummyField' not found
Error: package or namespace load failed for â■˜org.Hs.eg.dbâ■™

Any suggestions would be highly appreciated.

Thanks,


 -- output of sessionInfo():

> sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
 [1] AnnotationDbi_1.22.6       limma_3.16.6               pd.hugene.2.0.st_3.8.0
 [4] RSQLite_0.11.4             DBI_0.2-7                  oligo_1.24.1
 [7] oligoClasses_1.22.0        affyPLM_1.36.0             preprocessCore_1.22.0
[10] arrayQualityMetrics_3.16.0 affyQCReport_1.38.0        lattice_0.20-15
[13] simpleaffy_2.36.1          gcrma_2.32.0               genefilter_1.42.0
[16] affy_1.38.1                Biobase_2.20.1             BiocGenerics_0.6.0
[19] BiocInstaller_1.10.2

loaded via a namespace (and not attached):
 [1] affxparser_1.32.3    affyio_1.28.0        annotate_1.38.0      beadarray_2.10.0
 [5] BeadDataPackR_1.12.0 Biostrings_2.28.0    bit_1.1-10           Cairo_1.5-2
 [9] cluster_1.14.4       codetools_0.2-8      colorspace_1.2-2     ff_2.2-11
[13] foreach_1.4.1        GenomicRanges_1.12.4 grid_3.0.0           Hmisc_3.12-2
[17] hwriter_1.3          IRanges_1.18.2       iterators_1.0.6      KernSmooth_2.23-10
[21] latticeExtra_0.6-24  plyr_1.8             RColorBrewer_1.0-5   reshape2_1.2.2
[25] rpart_4.1-1          setRNG_2011.11-2     splines_3.0.0        stats4_3.0.0
[29] stringr_0.6.2        survival_2.37-4      SVGAnnotation_0.93-1 tools_3.0.0
[33] vsn_3.28.0           XML_3.95-0.2         xtable_1.7-1         zlibbioc_1.6.0

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