[BioC] org.Hs.eg.db package loading issues
Ekta Jain
ekta.jain at teri.res.in
Fri Jul 26 17:46:48 CEST 2013
Hi,
I got some error too when I was trying to load the org.Hs.eg.db in R. I
downloaded the .zip file of the package and then installed it manually as a
local package, it worked for me.
Hope it works for you as well.
Regards
Ekta Jain
Research Analyst
Biotechnology and Bio-resources Division
The Energy and Resources Institute, India Habitat Centre
Lodhi Road, New Delhi - 110033
#09958818853
ekta.jain at teri.res.in
-----bioconductor-bounces at r-project.org wrote: -----
To: bioconductor at r-project.org, jial2 at mail.nih.gov
From: "Guest [guest]"
Sent by: bioconductor-bounces at r-project.org
Date: 07/26/2013 09:13PM
Subject: [BioC] org.Hs.eg.db package loading issues
Hi,
When I run the R code on analysis of HuGene2.0ST array, it generated an
error as follows:
> source("/Users/jial2/Documents/projects/Project422/limmaAnalysis.R")
Loading required package: org.Hs.eg.db
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
call: get(name, envir = asNamespace(pkg), inherits = FALSE)
error: object '.setDummyField' not found
Error: package ââ Ëorg.Hs.eg.dbââ ⢠could not be loaded
Then I run the library individually, it still has the same error message.
> library(org.Hs.eg.db)
Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
call: get(name, envir = asNamespace(pkg), inherits = FALSE)
error: object '.setDummyField' not found
Error: package or namespace load failed for ââ Ëorg.Hs.eg.dbââ â¢
Any suggestions would be highly appreciated.
Thanks,
-- output of sessionInfo():
> sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
base
other attached packages:
[1] AnnotationDbi_1.22.6 limma_3.16.6
pd.hugene.2.0.st_3.8.0
[4] RSQLite_0.11.4 DBI_0.2-7 oligo_1.24.1
[7] oligoClasses_1.22.0 affyPLM_1.36.0
preprocessCore_1.22.0
[10] arrayQualityMetrics_3.16.0 affyQCReport_1.38.0 lattice_0.20-15
[13] simpleaffy_2.36.1 gcrma_2.32.0 genefilter_1.42.0
[16] affy_1.38.1 Biobase_2.20.1
BiocGenerics_0.6.0
[19] BiocInstaller_1.10.2
loaded via a namespace (and not attached):
[1] affxparser_1.32.3 affyio_1.28.0 annotate_1.38.0
beadarray_2.10.0
[5] BeadDataPackR_1.12.0 Biostrings_2.28.0 bit_1.1-10
Cairo_1.5-2
[9] cluster_1.14.4 codetools_0.2-8 colorspace_1.2-2
ff_2.2-11
[13] foreach_1.4.1 GenomicRanges_1.12.4 grid_3.0.0
Hmisc_3.12-2
[17] hwriter_1.3 IRanges_1.18.2 iterators_1.0.6
KernSmooth_2.23-10
[21] latticeExtra_0.6-24 plyr_1.8 RColorBrewer_1.0-5
reshape2_1.2.2
[25] rpart_4.1-1 setRNG_2011.11-2 splines_3.0.0
stats4_3.0.0
[29] stringr_0.6.2 survival_2.37-4 SVGAnnotation_0.93-1
tools_3.0.0
[33] vsn_3.28.0 XML_3.95-0.2 xtable_1.7-1
zlibbioc_1.6.0
--
Sent via the guest posting facility at bioconductor.org.
_______________________________________________
Bioconductor mailing list
Bioconductor at r-project.org
[1]https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives:
[2]http://news.gmane.org/gmane.science.biology.informatics.conductor
-------------------------------------------------------------------------------
-----------------------------
Disclaimer:
The information contained in this e-mail is intended for...{{dropped:12}}
References
1. https://stat.ethz.ch/mailman/listinfo/bioconductor
2. http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor
mailing list