[BioC] Make cdf package error Human Exon array
Maria [guest]
guest at bioconductor.org
Thu Apr 4 17:44:23 CEST 2013
Hello everybody!
I am not sure if this is the way for asking because I am new in this kind of "help-website" so, please if I am wrong tell me.
I am trying to make a cdf package for the Human Exon Array chip from Affymetrix (HuEx-1_0-st-v2). I have downloaded the file HuEx-10-st-v2.cdf from the Affymetrix website and write the following commands in the R program:
library(makecdfenv)
pkgpath<-tempdir()
make.cdf.package("HuEx-1_0-st-v2.text.cdf",cdf.path="/Working/HuEx-1_0-st-v2.r2",compress=F, species = "Homo_sapiens", package.path = pkgpath)
It costs me a lot of time and most of the RAM memory of my computer and at the end the following message appears:
Reading CDF file.
Error in .Call("reaD file", as.character(file), as.integer(3),
as.integer(compress), :promise already under evaluation: recursive default
argument reference or earlier problems?
I have no idea if I am doing anything wrong or if there is a better method for making the package, so any help will be really welcome.
Thank you,
Maria
-- output of sessionInfo():
R version 2.15.3 (2013-03-01)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United Kingdom.1252
[2] LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] makecdfenv_1.36.0
loaded via a namespace (and not attached):
[1] affy_1.36.1 affyio_1.26.0 Biobase_2.18.0
[4] BiocGenerics_0.4.0 BiocInstaller_1.8.3 preprocessCore_1.20.0
[7] zlibbioc_1.4.0
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