[BioC] biomaRt for COSMIC: frequency of mutation
Eleonora Lusito
eleonora.lusito at ieo.eu
Sun Sep 30 14:08:38 CEST 2012
Dear Users,
I have a long list of genes and I would like to retrieve informations about
mutations and especially the frequency of each mutation. I searched directly
using the COSMIC Biomart on the COSMIC web site but unfortunately frequencies
are not associated with each mutation when I export the final matrix. As an
alternative, I tried to use biomaRt, but unfortunately "frequency" is not
present between the filters/attributes.
Is there a way to retrieve this information using biomaRt or is there another
specific tool able to do that?
Thanks in advance
E.
--
Eleonora Lusito
Computational Biology PhD student
Molecular Medicine Program
via Ripamonti 435, 20141 Milano, Italy
Phone number: +390294375160
e-mail: eleonora.lusito at ieo.eu
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