[BioC] find CNAs using RAE method

[adesh ashok]

hey all

i have just normalized and segmented a  gene expression data set..
now i just wanted to find Recurrent copy number alterations (CNAs)
using the RAE method..which will also help me find the false dicovey
rate (FDR) for each candidate CNA
could any body tell me how is this done ..i also wanted to find out
the thresholds for losses/deletions and gains/amplifications of the
CNAs

any help will be greatly appreciated

thanking you

Adesh Ashok