[BioC] CAMERA for non-directional gene sets
Simon de Bernard
simon.debernard at altrabio.com
Mon Sep 3 12:58:02 CEST 2012
The publication for CAMERA (http://nar.oxfordjournals.org/content/early/2012/05/24/nar.gks461.full) mentions using the average absolute-logFC as a statistics for "non-directional" gene sets.
This would seem like the appropriate approach for gene sets from e.g. the GO database.
However I was unable to find how to use anything other than logFC or its rank from the camera documentation in limma.
Have I missed something?
Thanking you in advance,
Best regards,
Simon.
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