[BioC] RGalaxy not working with R 2.14.1?

[Dan Tenenbaum]

On Thu, Nov 15, 2012 at 8:44 AM, Samuel Lampa <samuel.lampa at it.uu.se> wrote:
> Hi,
>
> I'm trying to install RGalaxy [1] on my Ubuntu 12.04 box, as well as my
> Linux Mint box (Linux Mint is an ubuntu clone), but I get problems.
> According to the messages, RGalaxy does not work with R 2.14.1. Is this
> correct, or something that could be overridden?
>

The "since" field on the package home page
(http://bioconductor.org/packages/release/bioc/html/RGalaxy.html)
tells us that RGalaxy has been available since:
Bioconductor 2.11 (R-2.15).

So you need R-2.15 or R-devel in order to use it. Note that the API
has changed significantly in the devel version.

Dan



> (See my command log below)
>
> Best Regards
> // Samuel
>
> $ sudo R
>
>> source('http://bioconductor.org/biocLite.R')
> BiocInstaller version 1.2.1, ?biocLite for help
>> biocLite('RGalaxy')
> BioC_mirror: 'http://www.bioconductor.org'
> Using R version 2.14, BiocInstaller version 1.2.1.
> Installing package(s) 'RGalaxy'
> Installing package(s) into ‘/home/samuel/R/x86_64-pc-linux-gnu-library/2.14’
> (as ‘lib’ is unspecified)
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
> package ‘RGalaxy’ is not available (for R version 2.14.1)
>> library("RGalaxy")
> Error in library("RGalaxy") : there is no package called ‘RGalaxy’
>>
>
> [1] http://www.bioconductor.org/packages/2.12/bioc/html/RGalaxy.html
>
> --
> Developer at SNIC-UPPMAX www.uppmax.uu.se
> Developer at Dept of Pharm Biosciences www.farmbio.uu.se
> Twitter - twitter.com/samuellampa
> Blog - saml.rilspace.org
> G+ - gplus.to/saml
>
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