[BioC] RGalaxy not working with R 2.14.1?

Samuel Lampa samuel.lampa at it.uu.se
Thu Nov 15 17:44:18 CET 2012


Hi,

I'm trying to install RGalaxy [1] on my Ubuntu 12.04 box, as well as my 
Linux Mint box (Linux Mint is an ubuntu clone), but I get problems. 
According to the messages, RGalaxy does not work with R 2.14.1. Is this 
correct, or something that could be overridden?

(See my command log below)

Best Regards
// Samuel

$ sudo R

 > source('http://bioconductor.org/biocLite.R')
BiocInstaller version 1.2.1, ?biocLite for help
 > biocLite('RGalaxy')
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'RGalaxy'
Installing package(s) into ‘/home/samuel/R/x86_64-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ‘RGalaxy’ is not available (for R version 2.14.1)
 > library("RGalaxy")
Error in library("RGalaxy") : there is no package called ‘RGalaxy’
 >

[1] http://www.bioconductor.org/packages/2.12/bioc/html/RGalaxy.html

-- 
Developer at SNIC-UPPMAX www.uppmax.uu.se
Developer at Dept of Pharm Biosciences www.farmbio.uu.se
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