[BioC] Errors Installing Package qrqc under MacOsX
Sue Jones
sue.jones at hutton.ac.uk
Thu May 31 17:01:37 CEST 2012
I am using R version 2.15 under Mac OS X 10.6.8
When i try to install the qrqc package using
source("http://bioconductor.org/biocLite.R")
biocLite("qrqc")
library(qrqc)
I get the following error message
--------------------------------
BioC_mirror: http://www.bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.4.
Warning: unable to access index for repository
http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
Installing package(s) 'qrqc'
Error: Line starting '<!DOCTYPE html PUBLI ...' is malformed!
library(qrqc)
Error in library(qrqc) : there is no package called ‘qrqc’
------------------------------------
I think the first part of the error is perhaps related to the CRAN mirror -
but even when I use this
alternative suggested elsewhere on gmane
biocLite("qrqc", type="source")
I get a series of error message - the end of which is
--------------------
ERROR: dependency ‘biovizBase’ is not available for package ‘qrqc’
* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/qrqc’
The downloaded source packages are in
‘/private/var/folders/aS/aSrDK+ZQF+0QTLwvM0ZOXk+++TI/-Tmp-
/RtmpVVshp3/downloaded_packages’
Error: Line starting '<!DOCTYPE html PUBLI ...' is malformed!
-----------------------
Any help with what I am doing wrong would be appreciated.
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