[BioC] Amplicon and exon level read counts and GC content
Yu Chuan Tai
yuchuan at stat.berkeley.edu
Wed May 30 07:17:29 CEST 2012
Hi,
I have some questions about DNA-Seq and RNA-Seq analyses. In Amplicon
sequencing, is there any package/function which can extract amplicon-level
read counts and GC content from an aligned file of BAM format? The same
question to exon-level read counts and GC content. More generally, given a
genomic interval, how could I extract the read count and GC content for
that interval?
Thanks for any input!
Best,
Yu Chuan
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