[BioC] help with mapping statistics summary

[Wei Shi]

No matter which package you use, you got to be aware that many junction reads are reported multiple times by TopHat if you ran TopHat with the default setting. 

W

On May 22, 2012, at 6:31 PM, Leonor Carvalho wrote:

> Hi,
> 
> I am pretty new using the bioconductor and I have some RNAseq data on which I
> had performed and TopHat and I need to perform a mapping summary statistics
> from the results. I have a pretty large BAM file of accepted hits (aprox.
> 17GB).
> 
> I´ve been looking at the bioconductor packages and I found the Rsamtools, that I
> think maybe I can used to this propose, but can anyone give me any suggestion
> of some other package or how could I do this statistics summary?
> 
> BR,
> 
> Leonor
> 
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