[BioC] help with mapping statistics summary

Wei Shi shi at wehi.EDU.AU
Tue May 22 12:31:51 CEST 2012

No matter which package you use, you got to be aware that many junction reads are reported multiple times by TopHat if you ran TopHat with the default setting. 


On May 22, 2012, at 6:31 PM, Leonor Carvalho wrote:

> Hi,
> I am pretty new using the bioconductor and I have some RNAseq data on which I
> had performed and TopHat and I need to perform a mapping summary statistics
> from the results. I have a pretty large BAM file of accepted hits (aprox.
> 17GB).
> I´ve been looking at the bioconductor packages and I found the Rsamtools, that I
> think maybe I can used to this propose, but can anyone give me any suggestion
> of some other package or how could I do this statistics summary?
> BR,
> Leonor
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