[BioC] BSgenome packages for ce10 and panTro3 (was Re: BSgenome.Celegans.UCSC.cd10 for WS220)

[Zhu, Lihua (Julie)]

Herve,

Thank you for making the packages! I really appreciate it!

Best regards,

Julie


On 5/8/12 1:47 PM, "Hervé Pagès" <hpages at fhcrc.org> wrote:

> Hi Julie and other BSgenome users,
> 
> I've just made 2 new BSgenome data packages, one for ce10 (Oct. 2010,
> WS220 assembly), and one for panTro3 (Oct. 2010, CGSC Build 2.1.3):
> 
>    BSgenome.Celegans.UCSC.ce10
>    BSgenome.Ptroglodytes.UCSC.panTro3
> 
> The data in both packages were downloaded from:
> 
>    http://hgdownload.cse.ucsc.edu/downloads.html
> 
> Note that, strangely, ce10 is not listed in this table:
> 
>    http://genome.ucsc.edu/FAQ/FAQreleases.html#release1
> 
> The 2 new packages will become available for Bioc 2.11 users
> (Bioc devel) via biocLite() in less than 1 hour. Only the "source"
> packages are available for now. Windows and Mac users need to install
> with biocLite( ... , type="source").
> 
> Please let me know if you have any question or find any issue with
> those packages. Thanks!
> 
> Cheers,
> H.
> 
> On 05/07/2012 08:00 AM, Zhu, Lihua (Julie) wrote:
>> Herve,
>> 
>> Hope all is well with you! Please let me know when the
>> BSgenome.Celegans.UCSC.cd10 for WS220 is available for use.
>> 
>> Many thanks!
>> 
>> Best regards,
>> 
>> Julie
>> 
>> On 4/20/12 5:08 PM, "Julie Zhu"<julie.zhu at umassmed.edu>  wrote:
>> 
>>> Herve,
>>> 
>>> Great! Thanks so much for your kind help!
>>> 
>>> Best regards,
>>> 
>>> Julie
>>> 
>>> 
>>> On 4/20/12 4:04 PM, "Hervé Pagès"<hpages at fhcrc.org>  wrote:
>>> 
>>>> Hi Julie,
>>>> 
>>>> On 04/20/2012 10:48 AM, Zhu, Lihua (Julie) wrote:
>>>>> Herve,
>>>>> 
>>>>> Is it possible to add BSgenome.Celegans.UCSC.ce10 for WS220 in the
>>>>> Bioconductor release? Many thanks for your help!
>>>> 
>>>> Sure. Given the number of sticky notes that are accumulating in front
>>>> my eyes every day, it might take me a few days though. Thanks for your
>>>> patience...
>>>> 
>>>> Cheers,
>>>> H.
>>>> 
>>>>> 
>>>>> Best regards,
>>>>> 
>>>>> Julie
>>>>> 
>>>>> 
>>>> 
>>> 
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>> 
>> 
>